Trichechus manatus latirostris (Florida manatee): 101355034
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Entry
101355034 CDS
T05135
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tmu03009
]
101355034
03012 Translation factors [BR:
tmu03012
]
101355034
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101355034
5.6.2.5 RNA 5'-3' helicase
101355034
Ribosome biogenesis [BR:
tmu03009
]
Eukaryotic type
Other ribosome biogenesis factors
101355034
Translation factors [BR:
tmu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101355034
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
Viral_helicase1
DEAD
nSTAND3
AAA_25
UvrD-helicase
AAA_16
nSTAND_NTPase5
AAA_22
NAT10_TcmA_helicase
SLFN-g3_helicase
Flavi_DEAD
PhoH
IstB_IS21
DnaB_C
Zot
ABC_tran
AAA
NPHP3_N
ATPase
SRP54
Herpes_ori_bp
AAA_31
UvrD_C_2
DAP3
NTPase_1
AAA_7
Motif
Other DBs
NCBI-GeneID:
101355034
NCBI-ProteinID:
XP_004383944
UniProt:
A0A2Y9E0I8
LinkDB
All DBs
Position
Unknown
AA seq
1026 aa
AA seq
DB search
MASATVESFVTKQLDLLELERDAEVEERRSWQESISLKELQSRGVCLLKLQVSSQRTGLY
GRLLATFEPRRCGSAAVLPSNSFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDD
SDDFQLSLEREKSYRLLKLANDVTYKRLKKALLALKKYHSGPATSLIEVLFGGSDPSPAD
VTHPLTFYNTSLDTSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGSKVLC
CAPSNVAVDNLVERLAGCEQRVLRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDI
DHVFVKNKKTQDKREKSSFRNEIKQLRKELKEREDAAVLEILTLARVVLATNTGASSDGP
LKLLPENYFDVVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTVISHKAALAGLSL
SLMERLTERHGEGVVRMLTVQYRMHHAIMQWASEALYHGQLTAHTSVAEHLLRDLPGVAA
TEETALPLLLIDTAGCGLFELEGEEEQSRGNPGEVRLVSLHVQALVDAGVPARDIAVITP
YNLQVDLLRQSLAHRYPELEVKSVDGFQGREKEAVILSFVRSNWKGEVGFLAEDRRINVA
VTRARRHVAVVCDSRTVSNHTFLKTLVGHFTEHGEVRTAFEYLDDIVPENYSHESTQGPA
SVKAQGTAPAVRGPPGSGQQTGGRASRAARLDWKKPGAKASDSEATSQPSLNGGVPEPVE
GRDSMEHFKAMITAFVASEETRLEFPASLNARDRMWVHQIAEEMGLRHSSAGEGRGRRVT
VSKSTGPALLPPSPAQAERPPSPAQAERPPSPLQAERPPGPVHAERPPSPARAEHPPSPA
QAERSPSELSNSGGRSRDPLDLKALHLERLQREVGRQEQLAKKGQVGAGTRRLSEKKKRK
EGKGRVAIALPVDEDFDALVSAAIKADNTCGFAKCLASVVTLGQLCLHCSRRYCLSHHLP
EVHGCGERARAHARQRISREGVLYTGSGTKDRALDPARRAQLQRRLDTKLDALTNQRRSK
RKDKEK
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggcgactgtggagagcttcgtgaccaagcagttggacctgctggagctcgag
agagacgcggaggtcgaggagcgcaggtcctggcaggaaagcatctcgctgaaggaactc
cagagccgaggcgtttgtctcctgaagctgcaggtgtccagccagcgcaccgggctgtac
gggcggctgctggccaccttcgagcccagaaggtgcgggtctgcagcggtgctgcccagc
aacagcttcacttccggcgatatagtggggctgtacgacgccgctaatgaaggcagtcag
ctggccacggggattctgacccgggtcacccagaaatccgtcacggtggcttttgacgac
tccgatgatttccagttgagcttagagcgagagaagtcctacagactactcaaacttgcc
aacgatgtcacttacaagcgactgaaaaaagctctgcttgccctcaagaagtaccattcc
ggcccagcgacctccctcatagaagtgctcttcgggggctcagaccccagtcctgctgat
gtcacacacccgctaaccttctacaacacctccctggacacttcccagaaagaagcggtt
tcttttgcgctggcccagaaagagctcgccatcatccacgggcctcctggcactgggaag
accacgaccgtggtggagataatccttcaggctgtgaagcagggctcaaaggtcctgtgc
tgcgcgccctcgaacgtcgcggtagacaacctcgtggaacgcctggccggctgtgagcag
agggtcctgcgcctgggacacccggcccgcctgctggagtccattcagcagcactccctg
gatgcggttttggcgcgaagtgacagtgcccagattgtcgcagacatcaggaaggacatc
gaccatgtctttgtgaaaaacaaaaagacccaggataagagagagaagagtagttttcga
aatgagattaagcagttaaggaaagaactgaaggagagggaagacgcggccgtgctggaa
atcctcaccttggcccgcgtggtcctcgcaaccaacaccggtgcttcttctgatggccct
ttaaaattgctgcccgagaactactttgacgtggtagtcattgatgagtgtgcccaggcc
ctggaagcgagctgctggattcctttgctgaaggccaggaagtgcatcctggctggggat
cacaaacagctgccccccactgtgatctcacacaaggccgcgctggcggggctgtcgctc
agcctgatggagcgcctgacggagcggcacggcgagggtgtggtgcgcatgctgacagtg
cagtaccgcatgcaccacgccatcatgcagtgggcctccgaggccctgtaccacggacag
ctcacagcacacacctctgtggcggagcacctcctgagggacctcccaggagtggctgct
acagaggagacggccttgcccctgctgctcatcgacaccgccggctgcgggctgttcgag
ctcgagggggaagaggagcagtcgagagggaacccaggtgaggtccgcctcgtcagcctg
catgtccaagctctggtggacgccggcgtcccagcccgcgacatcgctgtcatcacgcca
tacaacctccaggtggacctgctccggcagagcctcgcccacaggtacccggagctggaa
gtaaagtcagtcgatggcttccaggggcgagagaaggaagctgtgatcctgtccttcgtc
agatccaattggaaaggtgaagttggctttcttgctgaggaccggcgcatcaacgtggca
gtcacccgcgcacgccgccacgtggcggtcgtctgtgactcacgcactgtctccaaccac
acgttcctgaagaccttggtgggccacttcacggagcacggggaggtgcgcacggccttt
gagtaccttgatgacatcgtgcctgagaactactcccacgagagcacccagggccccgca
agcgtgaaggcccagggcacagcccctgcggtgagggggcctccgggcagtgggcagcag
acgggaggccgggcctccagagctgccaggctggactggaagaagccgggcgctaaggct
tcagactccgaagccacttctcagcccagcctaaacggaggcgttccagagccagtggag
ggaagagacagcatggagcacttcaaggccatgatcacagcgtttgtggcgagtgaggag
acgcggctggagtttcctgcttccctgaacgcccgtgacaggatgtgggtccatcagatt
gctgaggagatggggctgaggcacagcagtgccggggagggcagggggcggcgcgtgact
gtgagcaagagtactggcccagccttgctgccccccagccctgcgcaggccgagcgtccc
ccaagccccgcacaggccgagcgtccccccagccccctgcaggccgagcgtccccctggc
cctgtacacgctgagcgtccccccagccctgcgcgggctgagcatccccccagccccgcg
caggctgagcgctcccccagtgagcttagcaacagcggtggccgcagcagggacccgctg
gacctgaaggcgctgcacctggaacggctgcagagggaggtgggccggcaggagcagctg
gccaagaaggggcaggtgggcgctgggacacggaggctgtcggagaagaaaaagaggaaa
gaaggaaaaggacgcgtggccatagctttgcccgtggacgaggactttgacgccctggtt
tctgctgccattaaggctgacaacacctgtggctttgccaagtgcttggccagcgtcgtg
accctgggccagctctgcctgcactgcagccgccggtactgcctcagccaccacctgccc
gaggtccacggctgtggggagcgggcacgtgcccacgcccggcagaggatcagccgggag
ggtgtgctttacactggcagcgggaccaaggacagggccctggaccccgccaggagggcg
cagctgcagaggcggctagacacaaagctggacgccctgaccaaccagaggaggagcaag
aggaaagacaaggagaagtga
DBGET
integrated database retrieval system
