Trichechus manatus latirostris (Florida manatee): 101356205
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Entry
101356205 CDS
T05135
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101356205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101356205
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101356205
Spliceosome [BR:
tmu03041
]
Complex C
Other components
Step II factors
101356205
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
T2SSE
TsaE
PhoH
Sigma54_activ_2
OB_RRP5_4th
ABC_tran
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101356205
NCBI-ProteinID:
XP_004374385
UniProt:
A0A2Y9DGY7
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MAVAVALAGTVTGAEPGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKTSLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTSKDPVVKPKTEKEKLKELFP
VFCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQDKQRDAEHRDRTKKKKRSRDR
DRDRERDRDRDHKRRHRSRSRSHSRTRERNKGKSRYRSRSRSQSPPKDRKDRDKYGERNL
DRWRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRV
ANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNRRRNLVGETNEETSMRN
PDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGIL
PKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKER
RELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQIAANMRGIGMMPNDIPEWKKHAFGGN
KASYGKKTQMSIIEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAG
YTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGML
LRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFS
QYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEI
DTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSL
TIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTER
AYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGA
LDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQA
LADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIM
DRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQP
EWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYE
EPNAWRISRAFRRR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggctgtggccctggccggaaccgtaaccggggcggagccaggccccgcggaa
gaactcgccaaactcgagtatttatctttggtgtcgaaggtttgcaccgagctggacaat
catttgggaatcaacgacaaggatctggctgaatttgtgatcagtcttgctgagaaaaat
accacctttgatacttttaagacttctctggttaaaaatggtgcagagttcacggattct
cttattagtaacttgctgcgtctcatacaaaccatgcggcctccagcaaagccttctact
agcaaagatccagttgttaaacccaaaactgaaaaagaaaagctgaaggaactcttccca
gttttttgccaaccagacaacccttccgttcggaccatgttggacgaagatgatgtgaaa
gtcgctgtggatgtcctgaaagaactggaagccttaatgcccagcgcagcaggccaggac
aagcagagagatgctgagcaccgggacaggacaaagaagaagaagaggagccgagatcga
gacagagacagagaacgagaccgagacagagaccataagcggcgacaccggtcccgttct
cgatcacattccaggacccgggagaggaataaagggaagtctagataccggtccaggagc
agaagtcagagtccccccaaagaccgcaaggaccgggacaagtatggggagaggaatctg
gacagatggcgggataagcatgtggaccgccctccccctgaggagcccgccatcggagac
atttacaatggcaaagttaccagcattatgcagtttgggtgctttgtgcagctggaggga
ctaaggaagcggtgggaagggctggtgcacatttctgagctccgacgggaaggccgcgtg
gccaatgtggctgatgtggtgagcaaaggccaaagggtcaaggttaaagtgctgtccttc
accgggaccaagaccagcctgagcatgaaggatgtagatcaagagactggagaagatctg
aacccaaaccgacgaagaaatcttgttggggagaccaatgaggagacctcaatgcggaat
cctgacagacccactcacctctcccttgtcagtgcccctgaagtagaggatgattcactg
gagcgcaaacgcctcacccgcatctctgatccagagaagtgggagatcaaacagatgatt
gctgccaacgtcctttccaaagaagagtttccagactttgatgaagagaccggcattctc
cctaaggtggatgatgaagaagatgaagaccttgagatcgaactggttgaggaagagcct
ccattcctgagaggacacaccaagcaaagcatggacatgagccccattaaaatcgttaag
aacccagatggctccctctcccaggcagccatgatgcagagtgccttggctaaagaaagg
cgggaactcaagcaggcgcaacgggaagctgagatggattctattcccatgggactcaac
aaacactgggttgatcctctgcctgatgcggaaggcaggcagattgctgccaacatgagg
ggtattgggatgatgcccaatgacattcccgagtggaagaaacatgcctttgggggcaac
aaagcatcttatgggaaaaagacccagatgtcaatcattgagcagagggagagcctgccc
atctacaaacttaaggagcagctggtccaggctgtccatgataatcagatcctgattgtt
attggagagacaggatctggcaagacaacacagatcacccagtacctggcggaggcgggc
tacacgtccaggggcaagataggatgtacccagcccagaagagtggcagccatgtcggtg
gccaaaagagtgtcggaggagtttggttgttgcttaggccaagaggtgggctacactatc
cgatttgaggactgcaccagccctgaaacagtaatcaagtacatgacggatgggatgttg
ctcagagagtgcctgatcgaccctgacctcactcagtatgcgatcatcatgttggatgag
gcgcacgagaggaccattcacactgacgtgctctttggattgttgaaaaagacggttcag
aaacggcaggacatgaagctgattgtcacctcagccaccttggatgcagtgaagttttct
cagtacttttatgaagctcccattttcaccatcccaggtcgaacttatccagtagaaata
ctgtacacaaaggaacctgagacagattatctggatgccagcttgatcactgtcatgcag
atccacttaacagagccaccaggtgatatcctggtcttcctgacaggtcaggaggagatt
gacacagcttgtgagatcctgtatgagcgaatgaaatccctgggacccgatgttccagag
ttaattatcctcccggtgtactccgcccttccgagtgagatgcagacccgaatctttgac
cctgctccacctggcagcagaaaggtcgtgattgctaccaacattgcagagacatcgctc
actatcgatggcatctactatgtggtggaccctggattcgtgaagcagaaagtgtacaat
tccaagacagggattgaccagcttgtggtgacacctatttctcaggctcaggcaaagcaa
cgagctggcagagctgggagaacaggcccagggaagtgctacaggctgtacacggaacgg
gcctaccgagacgaaatgctgaccaccaatgtgccggagatccagagaaccaacttagca
agcacagtgctctctctcaaggccatgggcatcaatgacctgctgtcctttgacttcatg
gatgccccaccaatggaaaccttgatcacagccatggagcagttgtacacactgggggct
ctggacgatgagggtctgctcactcgcctgggccgcaggatggcagagttccctctggag
ccaatgctgtgcaaaatgctgatcatgtctgtgcatctgggatgcagtgaggaaatgctg
accatcgtgtccatgttgtctgtgcagaatgtcttctacaggccgaaggataaacaagcc
ctcgcagatcagaagaaggccaaattccaccagaccgaaggggaccacctcaccttgctg
gctgtgtacaactcctggaagaacaataagttctccaacccatggtgctatgagaacttt
atccaggctcgttccctgcgccgggcccaggatattcgcaaacagatgttaggcataatg
gacagacacaagctggatgtagtctcctgtggcaagtccacagtccgagtgcaaaaggcc
atctgcagtggattcttccggaatgctgccaagaaagacccacaggaaggttatcggaca
ctgattgaccagcaggtggtctacatccatccttccagtgcactcttcaacagacagccg
gaatgggtggtgtaccacgagctggtgctgaccacgaaggagtacatgcgtgaggtcacc
accatcgatccccggtggcttgtggagtttgccccagccttcttcaaggtctctgaccca
accaagctaagcaagcagaagaagcagcagcgtcttgagcccttgtacaaccgctatgag
gagcccaatgcctggagaatatcccgggccttccggcggcgctga
DBGET
integrated database retrieval system
