Trichechus manatus latirostris (Florida manatee): 101357164
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Entry
101357164 CDS
T05135
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101357164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101357164
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101357164
Spliceosome [BR:
tmu03041
]
Complex C
Other components
Step II factors
101357164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Flavi_DEAD
Microtub_bd
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
101357164
NCBI-ProteinID:
XP_023597634
UniProt:
A0A2Y9RZW3
LinkDB
All DBs
Position
Unknown
AA seq
1245 aa
AA seq
DB search
MSCPKWFAFLPEKIPEPLMEDSSEDASIHRLEGTDLDSQVGGLICKTRSAASEQHVFKAP
APRPSLLGLDLLASLKRREREEKDDGEDKKKSRISSYKDWEEGKDDQRDAEEEDSDQSGR
SSRKDRHYRSARVETPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKDRKKEKSRDR
DYDRRRDRDERDRSRHSSRSERDGGSERNSRRNEPESPRHRPKDAATPSRSTWEEEDSGY
GTSRRSQWESPSPSPSCRDSERSHRPSTRDRDRSVRSKYSDDTPLPTPSYKYNEWADDRR
HLGSTPRLSRGRGRREDGEEGIPFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAY
SSEDYVRRREQHLHKQKQKRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNA
AKVHLMVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKK
AQHKHWELAGTKLGDIMGVKKEEEPDKAFTEDGKVDYRTEQKFADHMKKKSEASSEFAKK
KSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGC
TQPRRVAAMSVAKRVSEEMGGSLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREAD
LDHYSAIIMDEAHERSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIF
HIPGRTFPVDILFSKTPQEDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVE
HLEELENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVID
SGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTT
VPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTST
GRLMVEFPLDPALSKMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFA
VPESDHLTYLNVYLQWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASC
GTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHEL
VMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQ
LRARRQEQEKRSPLGSVRSTKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtcccaaatggtttgccttccttccagagaaaatcccagagcctttgatggag
gacagcagtgaggatgcttcgatccatcgattagaaggcactgatctggactctcaggtt
ggtggtcttatttgcaagaccagaagtgcggctagtgagcagcatgtcttcaaggctcct
gctccacgcccttcattgctgggactggacttgttggcctccctgaaacggagggagcga
gaggagaaggatgatggggaggacaagaagaagtccagaatctcttcctacaaggactgg
gaagagggcaaggatgaccagagggatgcggaagaagaggacagtgaccagtctggccga
agtagccgaaaagacagacattatcgttctgcccgagtagagacaccatcccatcctggt
ggtgtgagtgaagagttttgggaacgcagtcggcagagagagcgggaacggcgggagcat
ggtgtctatgcctcatctaaagaagaaaaggatcggaagaaagagaaatcacgggatcga
gactatgaccgcaggagagacagagatgagcgagatagaagtcggcatagcagtagatcg
gagcgagatggagggtcagagcgcaacagcagaagaaatgaaccagagagcccccgacat
cgacccaaagatgctgccactccttcaaggtctacctgggaggaagaggacagtggctat
ggcacttcaaggcgctcgcagtgggaatcgccctccccatcgccttcctgtcgagactct
gagaggagccatcggccttccactcgagatcgagataggtctgtgaggagtaagtactca
gatgacacacctctgccaaccccatcctacaaatacaacgagtgggcagatgacagaaga
cacctggggtccacaccgcgtctttccaggggccgaggaaggcgtgaggatggtgaggaa
ggaattccatttgacacagaagaggagcggcagcaatgggaggatgaccagcggcaagct
gaccgggattggtacatgatggatgagggatatgatgagttccacaatcccctggcctac
tcttctgaggactatgtgaggaggcgggaacagcatctgcataaacagaagcagaagcgc
atttcagctcagcggagacaaatcaatgaggataacgagcgctgggagaccaaccgaatg
ctcaccagtggtgtggtccatcggctagaggtggatgaagactttgaagaagacaatgca
gccaaggtacatctgatggtgcataatctggtgcctcccttcctggatgggcgcatcgtc
ttcaccaagcagccagaacctgtgattccagtcaaggatgccacttcagacttggccatt
attgctcgaaaaggcagtcaaacggtgcggaagcacagagagcaaaaggaacgcaaaaag
gctcagcacaaacactgggaattggctgggaccaaactgggagacataatgggtgtcaaa
aaagaggaagagccagataaagcttttacagaagatggcaaagtggattacaggacagag
cagaagtttgcggatcacatgaagaaaaagagtgaagccagcagtgaatttgcaaaaaag
aagtcgattctggagcagaggcagtacctgcctatctttgcagtgcagcaggaactactc
actattatcagagataatagcattgtgatcgtggttggagagacagggagtgggaagacc
actcagctgacccagtacttgcatgaagatggttacacggactacgggatgatcgggtgc
acgcagccccggcgtgtagctgccatgtcagtagccaagagagtcagtgaagagatgggt
ggaagccttggtgaggaggtgggttatgccatccgctttgaagattgcacctcagaaaac
accttgatcaaatacatgactgatgggatcctgctccgagagtctttgcgggaagccgac
ctggatcactatagcgccatcatcatggatgaggcccacgagcgctccctcaacactgat
gtgctgtttggcctgctccgggaggtggtagctcgacgctcagacctgaaactcatcgtc
acatcagccactatggatgcagagaaatttgctgccttttttgggaatgttcccatcttc
cacatccctggtcgcacctttcctgttgacatcctcttcagcaagaccccacaggaggat
tacgtggaggctgcagtgaagcagtccttgcaggtgcacctgtcgggggcccctggggac
atccttatattcatgcctggccaagaggacattgaggtgacctcagaccagattgtggaa
catctggaggaactggagaatgcacccgctttggccgtgctgcccatctattcccagctg
ccttctgacctccaggccaaaatcttccagaaggctccagatggtgttcgcaagtgtatt
gttgccaccaacattgccgagacatctctgactgtagatggcattatgtttgttatcgat
tctggttactgcaaattaaaggtcttcaacccgcggattggcatggatgctcttcagatc
taccccatcagccaggccaatgccaaccagaggtcagggcgagctggcaggacgggccca
ggtcagtgtttcaggctctacacccagagtgcctataagaacgagctactgaccaccaca
gtgcccgaaatccagaggaccaacctggccaacgtagtgctgctgcttaagtcccttggg
gtacaggatctgctgcagttccacttcatggacccacccccggaggacaacatgctcaat
tccatgtaccagctgtggatcctcggggccctggacaacacaggtggtctgacctctact
gggcgactgatggtggagttcccactggacccagccctatccaagatgcttattgtgtcc
tgcgacatgggctgcagctcggagatcctgctcattgtctccatgctctcagtcccggcc
atcttctacaggcccaagggccgggaggaggagagtgatcaaatccgggagaagtttgct
gtccctgagagtgaccatttgacctacctgaatgtctacctgcagtggaagaataataat
tactccactatttggtgtaatgatcatttcatccatgccaaagccatgcggaaggtccgg
gaggtgcgggctcaactcaaggacatcatggtgcagcagcgcatgagcctggcttcgtgt
ggcaccgactgggacattgtcaggaagtgtatctgtgctgcctatttccatcaggcagcc
aagctcaagggaattggggagtatgtgaatatccggacagggatgccctgccacttgcat
cccactagctccctctttggaatgggctacaccccggactatattgtgtatcacgaattg
gtcatgactaccaaggagtacatgcagtgtgtgactgctgtggacggagagtggctggcg
gagctgggccccatgttctacagcgtgaagcaggcaggaaagtcgcggcaggagaaccgc
cgtcgggccaaagaggaagcttctgccatggaggaggagatggcgctggctgaggagcag
ctgcgagcccggcgacaggaacaggaaaagcgcagccccctgggcagtgtcaggtctaca
aagatctatactccaggccggaaagagcaaggggaacccatgacccctcgccgcacccca
gcccgttttgggctctga
DBGET
integrated database retrieval system
