Trichechus manatus latirostris (Florida manatee): 101358019
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Entry
101358019 CDS
T05135
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101358019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101358019
Spliceosome [BR:
tmu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101358019
Complex C
U5 SnRNP specific factors
101358019
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
FAT
ARM_TT21_2nd
TPR_CcmH_CycH
ARM_TT21_C
T7SS_EccA1_N
Motif
Other DBs
NCBI-GeneID:
101358019
NCBI-ProteinID:
XP_004370208
UniProt:
A0A2Y9D8X4
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
QMVEKIIDRAITSLRANGVEINREHWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRK
HTWMEDADSCVAHSALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYER
ARRLLAKARSSAPTARVFMKSVKLEWVLGNLAAAQELCEEALKHYEDFPKLWMMKGQIEE
QEELVEKAREAYSQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLW
LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEHD
PHVLLAVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
CENAEPRHGELWCAVSKDIANWQKKIGEVLVLVAARIKNTF
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaaaaagaagccgttcctgggcatgcccgcgccgctcggctatgtgccgggg
ctgggccgcggcgccactggcttcaccacccggtcggacattgggcctgcccgggacgcg
aatgaccctgtggatgaccgccatgctccgccaggcaagaggaccgtcggggaccagatg
aagaaaaaccaggccgcagatgatgacgacgaggacctgaatgacaccaactatgatgag
tttaatggctatgccgggagcctcttctcaagtggaccctacgagaaggacgatgaggaa
gcagatgctatttatgcagcgctggataagagaatggatgaaaggaggaaagaaagaagg
gagcaaagggagaaggaggaaattgagaaataccgtatggaacgccccaaaatccagcag
cagttttcagatctgaagcggaaactggcagaggtcacggaagaagagtggctgagcatc
cctgaggtgggcgacgccaggaacaagcgccagcggaacccgcgctacgagaagctgacg
ccggttcccgacagcttcttcgccaagcatttgcagactggagagaaccacacttcagtg
gatccccgacaaactcaatttggaggtcttaacacgccctacccaggcggactgaacacc
ccgtacccaggtggaatgacaccgggattgatgactcctggcacaggtgagctggacatg
aggaagataggccaagccaggaacacactgatggacatgaggctgagccaggtatctgac
tccgtgagtgggcagactgtggtcgaccccaaaggctacctgacggacttgaattccatg
atccccacacatggaggggacatcaatgatatcaagaaggcccggctgctgctcaaatct
gtgcgggagaccaaccctcatcacccgccggcctggatcgcctcagcccgcctggaggag
gtcacggggaagctgcaggtggcgcggaacctcatcatgaaggggacagagatgtgcccc
aagagtgaagatgtctggctagaagcagccaggttgcagcctggggacacggccaaggct
gtggtggcccaagcagtccgtcacctcccacagtctgttcggatttacatcagagcagca
gagctggaaacagatattcgcgcaaagaagcgggtacttcggaaagcccttgaacacgtt
ccaaactccgtccgtttgtggaaggctgccgtggagctggaggagccagaagatgccagg
atcatgctcagccgtgccgtggagtgctgtcccaccagcgtggagctctggcttgccctg
gcgaggctggagacctatgaaaatgcccgcaaggtcctgaacaaggcccgggagaacatc
cccacggaccggcacatctggatcacagctgccaagcttgaggaggccaacgggaacaca
cagatggtggagaagatcatcgaccgcgctatcacttctctgcgggccaatggcgtggag
atcaaccgtgagcactggatccaggacgccgaggagtgtgacaaggctggcagtgtggcc
acctgccaggcagtcatgcgtgccgtgatcggcattgggattgaggaggaggaccggaag
cacacctggatggaggacgccgacagttgcgtggcccacagtgccctggagtgtgcccgt
gctatctacgcctacgccctgcaagtcttccccagcaagaagagcgtgtggctgcgagca
gcttactttgagaagaaccacggcaccagggagtccctggaggcgctcttgcagagggct
gtggcccactgccccaaggccgaggtgctgtggctcatgggcgccaagtccaagtggctg
gcgggagacgtgcccgccgcaaggagcatcctagctctggccttccaggccaaccccaac
agcgaggagatctggctggcagccgtgaagctggagtcggagaacaatgagtacgagcgg
gcccggaggctgctggccaaggcacggagcagcgcacccactgcccgggtgttcatgaag
tccgtgaagctggagtgggtgctagggaacctcgctgctgcccaggagctgtgcgaggag
gccctgaagcactatgaggattttcccaagctgtggatgatgaaggggcagatagaggag
caggaggagctggtggagaaggcccgggaggcctacagccaggggttgaagaaatgtccc
cactccacacccctgtggcttttgctttcccggctggaggagaaggttggacagctcacc
agagcgagagctatcctggagaagtctcgtctaaagaaccctaagaaccccggcctttgg
ttggaatccgtgcggctggagtaccgggcggggttgaaaaacatcgccaacacactcatg
gctaaggccctgcaggagtgccccaactcaggcatcctctggtctgaagcagttttcctc
gaggcccgaccccagaggaagaccaagagtgtggacgctctgaagaagtgtgagcatgac
ccgcacgtgctcctggccgtggccaagctgttctggagtgaacggaagatcaccaaggcc
agggagtggttccaccgcaccgtgaagatcgactcggacctgggggatgcctgggcgttc
ttctacaagtttgagctgcagcacggcacagaggagcagcaggaagaggtgaggaaacgc
tgtgagaatgcagagccacggcatggggagctgtggtgcgccgtatccaaggacatcgcc
aactggcagaagaagatcggggaggtgctcgtgctggtggccgcccgcatcaagaacacc
ttctag
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