Trichechus manatus latirostris (Florida manatee): 101358052
Help
Entry
101358052 CDS
T05135
Name
(RefSeq) nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03013
Nucleocytoplasmic transport
tmu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101358052
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101358052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101358052
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101358052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
TRS130_4HB
HEAT_SCC3-SA
Gar1
Motif
Other DBs
NCBI-GeneID:
101358052
NCBI-ProteinID:
XP_023586565
UniProt:
A0A2Y9QT09
LinkDB
All DBs
Position
Unknown
AA seq
1731 aa
AA seq
DB search
MAAAAGESCVRSSRELWTILLGRSALRELNQIEAELNKHWQRLLEGLSYYRPPSPSSAEK
VKANKDVASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTILQDERQSQA
LILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYADCVDKLEKELVSKYRQQFEEL
YKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLLVLTKMFK
EQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRRELHQFSQDG
LISQDMDRLMLTFGDIPHHAPVLLAWALLRHTLNPEETSSIVRKIGGTAIQLSVFQYLTR
LLRSLASGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLADPSLPELF
WGTEPTSGLGIILDSVCGMFPHLLSPLLELLRALVSGKSTAKKVYSFLDKMSFYNELYKH
KPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWT
LFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL
TTVISPPVDVIASCVNCLTVLAARNPAKVWTDLRHTGFLPFVAHPVSNMSQMISAEGMNA
GGYGNLLMNSEQPQGEYGVTIAFLRLITTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHK
WRYNSHGVREQIGCLILELIHAILNLCHETDLQSSHSPSLQSLCICSLAYTEAGQTIINI
MGIGVDTIDMVMAAQPRSDGAEGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALT
QHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDAFL
FRLQSKIEDMRIKVMVLEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGVWSCLHAV
LELIDCQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGTLS
PLSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFVYWSGYVKSL
AVHMAETEGSSCTSLVEYQLLVSAWRMLLIIATSHADIMHLSDSAVRRQLFLEVLDGTKA
LLLVPSSVNCLRLGSMMCTLLLILLRQWKRELGSVDEILGPLTEILEGVLQADQQLMEKT
KAKVFSAFITVLQMKEMRVSDIPQYSQLVFNVCETLQEEVIALFDQTRHSLASGNTTEDK
DSMETDDCSRPRPKDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPILPTLFTTLEV
SLRMKQNLHFTEASLHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLSTNGTVQTPS
TSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQCLNAVRTVQS
LACLEEADHTVGFILQLSNFMKEWHFHLPQLMRDVQVNLGYLCQACTSLLHSRKMLQHYL
QNKNGDVIPSAVAPRVQRPPTAAPAAPAAPAAPTCSASSKQPTADTEASEQRALRTVQYG
LLKILSRTLAALRHFTPDVCQILLDQSLDLAEYNFLFALSFTTPTFDSEVAPSFGTLLAT
VNVALNMLGELDKKKEPLSQAVGLGTQVEGTRTLKSLLMFTMENCFYLLISQAMRYLRDP
AVHPRDKQRMKQELSSELVRMEGAGLTAKEPHGSGMLCQRHWASSSCSFSL
NT seq
5196 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgctggcgagtcgtgtgtgaggagcagtagagaactgtggacaattctg
cttggaaggtcagctctgagagaactgaatcagattgaggcagaactgaataaacattgg
cagcggctgttagaggggctttcctactacagacctcccagtccaagttcagctgaaaaa
gtgaaagctaacaaagatgtagcttcaccactgaaagaactgggtttaagaatcagcaag
tttttgggtcttgatgaagaacagagtgtgcagttactccagtgttaccttcaagaggat
tacaggggtactcgggactcactgaagacgatactacaagacgagaggcagagccaggcc
ttgatcctgaagattgcagattattactatgaagaaagaacctgtattcttcgttgtgtt
ttacaccttctcacatacttccaagatgaaaggcacccctatagggttgaatatgcagac
tgtgtcgataaattagagaaggagctagtttccaaatacagacagcagtttgaagagctt
tataaaactgaagcaccaacatgggagacacatggaaacctcatgactgagcgccaggtg
tctcgctggtttgttcagtgccttcgggaacagtccatgctgctagaaattattttcctt
tattatgcctactttgagatggcacctagtgacctactggtattaactaagatgtttaaa
gaacaaggatttggtagcaggcagaccaacaggcacctggtggatgagaccatggatcct
tttgtggatcggattggctacttcagtgcccttattctggtggaaggcatggatatcgag
tccctgcacaagtgtgctttggatgacagaagagaactgcaccaattttcccaggatggg
cttatttctcaggatatggaccgtttgatgttgacctttggggacattccacatcatgcc
ccggtgcttttggcctgggctctcctccgtcacaccctgaacccagaagagacaagcagt
attgtccggaagataggtggcacagccatccaacttagcgtatttcagtacttgacccgg
ctcctgcggtcacttgccagtgggggaaatgattgcaccaccagcaccgcgtgcatgtgt
gtctatggactcctttccttcgttctgacctcgctggagctgcacactctgggcaatcag
caggatgtaattgacacggcttgtgaagtcctggcagacccttctcttccagagctattc
tggggaacagagccaacctctggtcttgggatcattcttgacagtgtatgtggaatgttt
ccccatctcctgtctccactcttggaattactccgagcccttgtatcagggaagtccact
gccaaaaaggtatatagtttcttggataagatgtctttctataatgaactctataagcac
aagccccatgatgtgatctcgcatgaagatggaactctttggcggaggcaaacacccaaa
cttctgtaccctcttgggggtcagaccaaccttcgcatacctcagggcactgtgggccaa
gtaatgctggatgatagggcttatctggtacgctgggagtactcctacagcagttggacc
ctctttacctgtgagattgaaatgctgcttcatgttgtttcaactgcagacgtgattcag
cactgccagcgggtcaagcccatcattgatctggtccataaggtcatcagtacagatctg
tcgattgcagactgcctcctgccgatcacgtcccgcatttacatgctgctgcagcggtta
acaacagtgatctccccccctgtggatgttattgcttcttgtgtcaattgtttgactgtt
ttggctgcccggaatccagcaaaggtctggactgatcttcgtcacacaggtttcttacca
tttgtggctcacccagtctccaacatgagtcagatgattagtgcggaagggatgaatgct
ggaggctatggaaacctcttgatgaacagtgaacagccccaaggcgagtacggggtcacc
attgcttttctgcgattgattaccactctagtcaaggggcagcttggtagtacccagagc
caagggctggtgccttgtgtcatgtttgttctgaaggagatgcttcccagctaccacaag
tggcgctacaattctcatggtgtgagagagcagattggttgcctgatcttggagctgatc
catgcgatactgaacctgtgtcatgagacagatctgcagagcagtcacagtcccagcctt
cagtctctgtgcatctgcagtctggcctacacagaagcgggacagaccattatcaacatc
atgggcattggcgtggacaccattgacatggtgatggcagctcagccccggagtgacgga
gcagagggccaggggcagctgctgatcaagacagtgaaactggcattctccgtcaccaac
aatgttattcggctgaaacctccttctaatgtggtgtcccccctggaacaagctctcaca
caacatggtgcccatgggaacaacctcattgctgttctagccaaatacatctaccacaaa
catgaccctgctttgccacgtcttgccatccaactgctgaaacgtctggccacggtggcc
ccaatgtcggtgtatgcctgtctgggcaacgatgcggctgccattcgcgatgccttcctg
tttcggctgcagagcaagattgaggacatgcgcatcaaagtcatggttttggagttcctc
acagttgcagtagagacccagccaggcctcattgaactgtttctgaacctggaggtgaag
gacggcagtgatggctccaaggaattcagccttggggtgtggagctgtctacacgcagtg
ctggagctgattgattgccagcagcaggatcgatactggtgcccacccctgctgcatcgt
gcagccattgcctttctgcatgccctgtggcaggaccgtcgggatagtgccatgctggtc
ctcagaaccaaacccaagttttgggagaatttaaccagcccactgtttggaaccctttct
cccctctcagaaacatctgagcccagcatcctggaaacctgtgccctaattatgaagata
atttgcttggagatatactatgttgttaagggctcactagaccagtcattaaaagataca
ctcaagaaattttccagtgaaaaacgctttgtctactggtcagggtatgtcaaatccttg
gcagttcacatggctgaaacagagggcagcagctgcacctccttggtagagtaccagttg
ctggtttctgcttggcggatgcttctcatcattgccaccagtcatgcagatatcatgcac
ctgagcgactctgcggtgcgtcgccagctctttcttgaagtgcttgatgggaccaaagcg
ttactccttgttccatcctcagtgaactgcctccgccttggctccatgatgtgcaccctg
ctgcttatccttctccggcagtggaagagagagttgggttctgtggatgaaattcttggc
cccttgacggagatcctggagggagtgctgcaggcagaccaacaactaatggagaagacg
aaggccaaggtgttttcagcgttcatcacagtgttgcagatgaaggagatgagagtaagt
gacatcccccagtactcccagctggtgtttaacgtctgtgagaccctccaagaagaggtg
attgcactctttgaccagacccgccacagcctggcatcgggcaataccacagaggacaag
gacagcatggagacggatgactgctctcggcctcggcccaaggaccagcgtgatggggtg
tgtgtcctgggcctgcacctggccaaggagctatgtgaggtggatgaggatggcgactcg
tggctgcaggtgacccgcagactcccaatcctgccgaccctcttcaccaccttggaggtg
agccttcgcatgaagcagaacctgcatttcaccgaggcttcgttgcacttgctgctcacc
ctggctcgcacccagcagggagccacagcagtagctggagccggcatcacccagagcatt
tgtttgcccctcctgagtgtgtaccagctcagcaccaatgggacagtgcagacacctagc
acttctcggaagtccctggatgccccctcttggccaggggtctaccgcctgtccatgtcc
ttgatggagaggctccttaaaaccctacgctacaacttcctgaccgaggccctggacttt
gtaggtgttcaccaggagcggaccttacagtgcctgaacgcagtgaggacagtgcagagt
ctggcctgtctagaggaggcagaccacaccgtgggcttcattctgcagctctccaacttc
atgaaggaatggcacttccacctgcctcagctcatgcgagatgtccaggtaaacctaggt
tacttatgccaggcctgcacctccctcctgcatagccgcaagatgctgcagcactaccta
cagaacaaaaatggggatgtcatcccctcggctgttgccccccgagtccagcggccgccc
actgctgcaccggctgcccctgctgcaccagctgcccctacctgctctgcctcctccaaa
cagccgactgcagacacagaggcctcggagcagcgagccttgcgcacagtccagtatggc
cttctcaagatcctcagccggactctggcggccctgcgccacttcacccctgatgtgtgt
cagatcctcctggatcagtccctggaccttgccgagtacaacttcctatttgctctgagc
tttaccactcccaccttcgactccgaggtggccccctccttcggcacacttctggccaca
gtgaatgtggccctgaacatgcttggagagctggacaagaaaaaggagccccttagccag
gctgtggggctcggcacacaggtggaagggaccagaacactaaagtccctcctgatgttt
accatggaaaactgcttctacctgctcatctcccaggcaatgcgttacctgagggaccca
gctgttcacccccgggataaacaacggatgaagcaggagctcagctcagagttggtacgg
atggagggggctgggctaacagcgaaagaaccccatgggtctgggatgctgtgtcagagg
cactgggcctcatcaagctgttctttttccttgtag
DBGET
integrated database retrieval system
