Trichechus manatus latirostris (Florida manatee): 101358072
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Entry
101358072 CDS
T05135
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03015
mRNA surveillance pathway
tmu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101358072
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
101358072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmu03021
]
101358072
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101358072
Transcription machinery [BR:
tmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101358072
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
101358072
U7-dependent histone pre-mRNA processing factors
101358072
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
101358072
NCBI-ProteinID:
XP_004381647
UniProt:
A0A2Y9DUW1
LinkDB
All DBs
Position
Unknown
AA seq
1278 aa
AA seq
DB search
MASSSGDSVTRRSVASQFFTQEEGAGIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDARKRPRDDSDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSAQGQAISVVGSLSSMSTLEEEAPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRVKILASLVTQFDSGL
KAEVLSFILEDVRARLDLAFAWLYQEYNSYLAAGASGSLDKYEDCLMRLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDTVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
SRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLDAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMAILEASGKQEPEAKEAPAGPLEEDDLEPLALAPAPAPAPRPPQDL
IGLRLAQEKALKRQLEEEQKLKPGGVGVSSSTSSSSASSSSAWPGPPPPEEAMDFREEGS
ECETPAIFISKDDDSGLTEAALLDSSLEGPLPKEAAAGGLTAKEERSPQALAPAGEDAAK
TPSPVGEEAGEPETKGNS
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcagcagtggggacagtgtcacccgccggagcgtggcctctcagtttttcaca
caagaggagggagcaggcattgatggcatgaccacctcagaaagggtggtggatctcctg
aaccaggcggcgctgatcaccaatgactcaaagattacagtgcttaagcaggtccaagag
ctgatcatcaacaaagaccccacactgctggacaacttcctggatgagatcatcgccttc
caagcagacaagtcgattgaagtgcgcaagtttgtgattggcttcatcgaggaggcctgc
aagagagacattgagttactgctgaaactgatcgcaaacctcaacatgctcctgagggat
gagaacgtgaatgttgtgaagaaggccatcctcaccatgactcagctctacaaggtggcc
ctgcagtggatggtgaagtcacgggtcatcagcgagctccaggaggcctgctgggacatg
gtgtcggccatggccggggacatcatcctgctgctggactctgacaatgacggcatccgc
actcacgccatcaagtttgtggagggcctcatcgtcaccctgtcgccccgcatggcggac
tcggaggtgccccggcgccaggagcatgacattagcctggaccgcatccctcgtgaccac
ccctacatccagtacaacgtgctgtgggaagagggcaaggcagccctggagcagctgctc
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcactgggctccctt
gccaatatcgcccgccagaggcccatgttcatgtcggaggtgatccaggcctacgaaacc
ctgcacgccaacctccccccaacgctggccaaatctcaggtgagcagcgtacgcaagaac
ctcaagctacacctgctgagtgtgctgaagcacccggcctccttggagttccaggcccag
atcaccaccctgctggtggacctgggcacacctcaggccgagatcgcccgtaacatgccc
agcagcaaggacgcccgcaagcggcctcgagacgactcagattccacgctcaagaagatg
aagctagagcctaacctgggggaagatgacgaggacaaggacttggagccaggcccatcg
gggacatcaaaggcctcagcccagatctcgggccagtcagacacagacatcacagccgag
ttcctgcagcctctgctgacacctgacaacgtggccaatctggtcctcatcagcatggtg
tacctgcccgaggccatgcccgcctccttccaggccatctacaccccggtggagtcagca
ggcaccgaagcccagatcaagcacctggctcggctcatggccacacagatgacggctgcg
ggactggggccaggtgtggagcagaccaaacagtgcaaagaggagcccaaggaagagaag
gtggtgaagccggagagcgtcctgatcaagcggcgcctgtcagcccagggccaagccatc
tcggtggtgggttcccttagctccatgtccacactggaggaggaggcgccccaggccaag
agaaggccagagcccatcatccccgtcacgcagccccggttggcgggtgcaggcggccgt
aagaaaatcttccgtctaagcgacgttctgaagcccttgaccgacgcccaggtggaggcc
atgaagctaggcgccgtaaagcggatcctgcgggctgagaaggccgtggcctgcagcggg
gcggcccaggtgcgcgtaaagatcttggccagcctggtgacgcagttcgactcaggcctg
aaggccgaggtcctatccttcatcctggaggatgtgcgagcccgccttgatctggccttt
gcctggctctaccaggagtacaactcctacctggccgcaggcgcctcaggcagcctggac
aagtacgaggactgtctcatgcgcctgctctctggcctgcaggagaagccagaccagaag
gatgggatctttaccaaggttgtgctggaggcgcccctgatcaccgagagtgccctggag
gtgatacgcaagtactgcgaggatgagagccgcacctacctgggcatgtccactcttcga
gatctgatcttcaagcgcccatcccgccagttccagtacctgcatgtcctgctagacctc
agctcccatgagaaggacaaggtgcgttcccaggccctgctcttcatcaagcgcatgtat
gagaaggagcagctgcgagagtacgtggagaaattcgccctcaactacctgcagctcctg
gtccaccccaacccgccgtccgtgctgtttggtgccgacaaggacacagaggtggcagcg
ccttggaccgaggagacggtgaagcagtgtctgtacctctacctggccctcctgcctcag
aatcacaagctcatccacgagctggcagccgtgtacacggaggccatcgcagacatcaag
cggacggtgctgagggtcatcgaacagccgatccgaggaatgggcatgaactcgccagag
ctgctcctgctggtggagaactgtcccaagggggcagagacactggtcactcgatgtctt
cacagcctcacagacaaagtcccaccctccccagagctggtgaagcgggtccgggacctg
taccacaagcgcctgcctgatgtccgcttcctcatccctgtgctcaatggtctggagaag
aaagaggtgatccaggccctgcccaaactcatcaaactcaaccccatcgtggtgaaagag
gtcttcaaccgcctgctgggcacccagcacggtgaagggaattcagccctgtcccccttg
aaccctggagagcttctgattgcattgcacaacatcgacacagtgaagtgcgacatgaaa
tctatcatcaaagccaccaacctgtgtttcgctgagcggaacgtgtatacgtcggaggtg
ctggccgtggtgatgcagcagctgatggagcagagccccctgcccatgctgctcatgagg
accgtcatccagtccctgaccatgtacccccgcctggggggcttcgtcatgaacatcctg
tcccggctcatcatgaagcaggtgtggaagtaccccaaggtgtgggagggcttcatcaag
tgctgccagcgcaccaagccccagagcttccaggtcatcctgcagctgccaccccagcag
ctagacgccgtctttgacaagtgccccgagctccgcgagcccctgctggcccacgtccgc
tccttcacgccccaccagcaagcacacatccccaactccatcatggccatcctggaggcc
agcggcaagcaggagccggaggccaaggaggcacccgcagggcccctggaagaggacgac
ctggagcccctggccctggcgccggcgccggccccggccccccggccccctcaggacctc
atcggcctgcggctggcccaagagaaggccctaaagcggcagctggaggaggaacagaag
ctgaagcccggaggagtgggggtctcctcctccacttcctcctcctcggcttcctcttcc
tcggcgtggccgggcccgcccccacctgaggaagccatggatttccgggaggaggggtcc
gagtgtgagacccccgccatcttcatcagcaaggacgacgactcagggctgactgaggct
gcgctcctggactcgagtcttgaagggcccctacccaaggaggcagcagcgggcgggctg
accgcaaaggaggagcggagcccccaggccctcgcccctgccggagaagacgccgcgaag
acccccagcccagtcggcgaggaagccggggagcccgagaccaaggggaacagttga
DBGET
integrated database retrieval system
