Trichechus manatus latirostris (Florida manatee): 101358346
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Entry
101358346 CDS
T05135
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04151
PI3K-Akt signaling pathway
tmu04510
Focal adhesion
tmu04512
ECM-receptor interaction
tmu04820
Cytoskeleton in muscle cells
tmu04926
Relaxin signaling pathway
tmu04933
AGE-RAGE signaling pathway in diabetic complications
tmu04974
Protein digestion and absorption
tmu05146
Amoebiasis
tmu05165
Human papillomavirus infection
tmu05200
Pathways in cancer
tmu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101358346
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101358346
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101358346
09142 Cell motility
04820 Cytoskeleton in muscle cells
101358346
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101358346
09154 Digestive system
04974 Protein digestion and absorption
101358346
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101358346
09162 Cancer: specific types
05222 Small cell lung cancer
101358346
09172 Infectious disease: viral
05165 Human papillomavirus infection
101358346
09174 Infectious disease: parasitic
05146 Amoebiasis
101358346
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101358346
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tmu04147
]
101358346
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101358346
Exosome [BR:
tmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101358346
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101358346
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101358346
NCBI-ProteinID:
XP_023595887
UniProt:
A0A2Y9RN37
LinkDB
All DBs
Position
Unknown
AA seq
1708 aa
AA seq
DB search
MVATRAGPGSARGPAGFRPVSPCAAQAGRPGREAGRAGAPGRVLSLILILFSVQHGYGSG
KKYIGLCGGRDCSVCQCFPEKGSRGQPGLLGPQGPIGYLGPPGPIGIPGEKGMRGDSGPP
GAVGEKGDKGPTGVPGFPGLDGIPGHPGPPGSRGKPGMNGYNGSRGDPGLPGERGAPGPG
GRPGLPGENGEKGNSVFILRGIKGIQGDRGDPGPPGFPGSRGASGPAGPMGFPGELGLTG
PPGPPGSPGLKGNPGVGVKGQKGDPGEVGRQGSPGPTLLVEPPDFCLYKGEKGIKGMPGV
TGPPGPFGFKGKPGTGPKGEKGIIGFPGPRGDPGSHGVPGFPGLKGEPGLVGDPGPFGFL
GSKGDPGDRGHRGPPGVLLTPPVPLKGPPGDPGFPGHYGEVGAVGPPGPPGPSGRPGEAR
AGMMGPPGPRGFPGRPGLPGTAGIPGRAAPGKPGNPGPPGLPGAPGLQGPPGSDVIYCSV
GNPGPQGIKGKMGPPGRRGSKGEKGNEGLCACEPGPMGPPGLPGLPGQQGSKGDLGLPGW
LGERGDPGPPGAEGSPGPPGKPGASGPRGNKGEKGDMVVSRVKGHKGERGPDGPPGFPGQ
QGQDGWDGLAGGRGDPGPPGDHEDATPGGKGFPGPPGPPGRAGSVGPPGLGFPGPPGERG
RPGAPGYPGVRGPDGLKGPRGDTIPCNITYPGRPGPPGFDGPPGPNGFPGSRGAPGPRCF
NGQKGRRGKPGISEIPGPPGFRGDMGDPGFKGEKGSSPVGPPGLPSLPGVDGRKGIPGDP
AYGHPGPPGKRGLSGVPGVKGPQGDPGHPGAAGPAGTPGIPGLKGPKGREGSAGFPGNPG
PPAHSCERGVPGIPGQPGLPGAPGSPGAPGWKGQRGDEGPPGPAGMKGLSGVPGWPGAEG
LPGPPGISGPSGDDGLPGLPGPQGPQGLPGVPGFPGERGKPGPEGRPGRKGEHGEKGWPG
LLGDQGTRGAKGERGPPGDEGDVTIISKKGKAGGPGPPGDVGFPGEKGDKGSPGMQGRRG
EPGRQGPPGFHSGEPGRNGQPGLPGPQGPPGLPGLRGIIGFPGFPGDQGDPGSPGPPGFS
GIDGGRGPKGNKGDPARQVGPPGPKGDPGSLGCPGHFGVPGEQGLPGVQGPRGPPGRPGL
PGSSGPPGCPGDRGVTGLRGHPGETGDPGPRGLMGNPGSPGPPGMKGSSGSPGLNGLHGL
KGQKGSKGASGLHEIGPPGPVGMPGLKGETGDPGSPGISPPGLFGEKGPPGPPGRPGPPG
PAGAPGRAPKGDIPDPGPPGDQGPPGPDGLRGAPGPPGAPGRVDLLRGEPGDCGLPGPPG
PPGPPGPPGCKGFPGCNGNDGQKGPMGFPGPQGPHGFPGPPGEKGLPGPPGQQGPPGPPG
SRGEPGPPADADACPRIPGLPGVPGPRGPEGAMGVPGTRGPPGPECKGEPGLDGRRGEPG
IPGAPGPPGSKGDTGEAGCPGAPGPPGPVGDPGPKGFGLGYLSGFLLVLHSQTDQEPSCP
VGMPKLWTGYSLLYLEGQEKAHNQDLGLAGSCLPMFSTLPFAYCNTHQVCHYAQRNDKSY
WLASAAPLPMMPLSEEEVRPYISRCAVCEAPAQVVAVHSQDKSIPPCPRSWRSLWIGYSF
LMHTGAGSQGGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANEYSFWLTTVKPDLQF
SAPSPDTLKESQAQRQKISRCQVCVKYS
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggtggccacccgcgcggggcccgggagcgcccggggacccgcaggcttccggccagtc
agtccctgcgcggcgcaggctgggcgccccggccgtgaggctggccgagccggcgcgcca
gggcgggttttgtcacttatacttattctcttttctgtacaacatggctatgggagtgga
aagaagtatattggtctgtgtggaggaagagattgttctgtttgccagtgctttcctgaa
aaagggtctcggggtcaaccaggattactgggaccacagggtccaattggatacctggga
cctccaggacctattgggattccaggagagaaagggatgagaggtgacagtggccctcct
ggagcagtaggggagaagggggacaagggtccaactggtgttcctggatttccaggtttg
gatggcatacctggacacccagggcctcctggatccagaggcaaacctggcatgaatggc
tacaatggctcaagaggtgatccagggcttccaggagaaagaggagctcctggcccagga
ggacgcccaggtcttcctggagaaaatggagaaaaaggaaattcagtgttcattttacgt
ggcatcaaaggtattcagggagacagaggggacccaggacctcccggcttcccaggatct
aggggagcgagtggaccagcaggcccaatgggctttccaggagagctggggttaacaggt
cctcctggccctcctgggagtccaggtttgaagggtaatcctggcgtgggagttaagggg
caaaagggagacccgggtgaagttggccggcaaggttctccaggaccaaccctgttggtg
gagccacctgatttttgtctctataaaggagaaaagggtataaaaggaatgcctggagtt
actgggccaccaggaccttttggattcaagggaaaacctggcactgggccaaaaggagaa
aaaggtattattggattcccaggacctcggggtgaccctggttcccatggagttccaggc
tttccaggattaaagggggaaccaggactggttggtgatcctgggccgtttggatttctt
ggctcaaagggggatcctggagaccgtggacaccgaggaccaccaggtgttttgttaact
ccacctgttccactcaaaggccctccaggggatccggggttccctggccactatggagaa
gtgggggcagttggaccgcctggtcccccgggtccctcaggtagaccaggggaagcccgg
gcaggcatgatgggacctccagggccccgagggtttcctggtcgtccggggcttccaggg
acagctggtattcctgggagagctgctccaggaaaaccaggaaacccaggaccacctggc
ctgcccggagcgccaggactgcagggacccccaggatcagatgttatatattgtagtgtt
gggaaccctggaccacaaggaataaaaggcaaaatgggtcctccaggaagaagaggctcc
aaaggagaaaaaggaaacgaagggctctgtgcctgcgagcctggtcccatggggcctcct
ggtctcccaggacttcctgggcagcagggtagtaagggagacttggggcttccggggtgg
cttggagaaagaggggacccaggtcctcctggtgccgaaggatctccggggccaccagga
aaacctggtgcctcaggaccacgtggcaacaaaggagaaaagggtgacatggttgtatcg
agagttaaagggcacaaaggagaaagaggtcctgatgggcccccaggattcccagggcaa
cagggacaagatggttgggatggacttgctggaggaagaggagacccaggacccccaggg
gatcatgaagatgcaaccccaggtggaaaagggtttcctggaccgccagggcccccaggc
agagcaggatctgtgggacctccaggtctgggatttcctggtccaccaggagagagaggg
agaccaggagctccaggctaccccggcgtgagaggccctgatggcttgaagggcccgaga
ggtgatacaattccttgtaacataacctacccaggaaggccaggccctccaggttttgat
ggacctccaggtccaaacggatttccaggttcccggggtgctcctgggccaaggtgcttt
aatgggcaaaaaggtcgacgtggcaaaccgggaatatctgaaataccaggtccacctggt
tttcgtggtgacatgggagacccaggttttaaaggtgaaaaaggctcctcccctgttggg
ccaccaggccttcccagtttacctggtgtggatggtcggaaaggaatcccaggtgaccct
gcgtacggccacccaggacctccaggaaagaggggtctttcaggagtgccgggggtgaaa
ggcccccaaggtgacccaggtcatccgggggctgcagggccagctggcactccaggaatt
ccaggcctcaagggtcccaaaggcagagagggaagtgctgggtttccaggtaacccaggc
ccacctgcccattcctgtgaaagaggtgttccggggataccagggcagccaggacttcct
ggggctccaggtagtccaggtgccccaggctggaaaggacagcgaggggatgaagggcct
cctggaccagctggaatgaagggtctttccggagtcccaggatggccaggtgcagaggga
ctccctggaccaccaggaatctcaggcccttctggggatgatggactacctggtcttcca
ggcccacagggacctcagggtctgcctggtgtccctggttttccgggggagagaggaaag
cctggcccagagggacgacctggcagaaagggagaacacggagagaaaggttggcctggt
cttctgggagaccagggaacgagaggtgccaaaggagagagaggacctccaggagatgaa
ggagacgtgactataatttccaaaaaagggaaggcaggaggtcctggaccccctggagat
gttggattcccaggagaaaaaggtgataaaggaagtccagggatgcaagggagacgagga
gaaccaggaagacaaggaccacctggatttcacagtggagagcctggtagaaatggacag
ccagggcttcctggaccccaaggacctccaggcttacctggcctaagagggatcattggt
tttccaggatttccaggtgaccagggtgatccaggttctccaggcccccctggattttca
gggattgatggagggagaggacctaaaggaaacaaaggtgatcctgcaaggcaggttggt
ccacctggtccaaagggtgatccaggtagccttggatgtccagggcacttcggagtcccc
ggagagcagggcttgcctggtgttcaagggcccagaggaccacctggaaggccaggactg
ccaggctcctccggaccaccagggtgtccaggtgatcgaggggtgactgggctgagggga
catccaggagaaacaggggaccctggaccaagaggcctcatggggaatccagggtcacca
ggtcctccaggaatgaaaggttcctcggggtctcctggcctgaacggcttgcatggttta
aagggccagaaaggaagcaaaggtgcttcaggtttgcatgaaataggcccaccaggtcca
gtgggaatgcctggactgaaaggggagacaggagaccctgggagtccaggaatttctcct
ccaggactttttggagaaaaaggtcctccaggtcccccagggagaccaggaccacctggt
cctgcaggtgccccaggaagagctcctaagggtgacattcctgacccgggtccacctgga
gatcaggggcctcccggtcctgatggtctaagaggcgcaccagggcctccaggtgcccct
gggagggttgacctcctgagaggggagccaggtgactgtggccttccagggccaccaggt
cccccaggcccaccaggccctccaggatgcaaaggtttcccaggatgcaatggaaatgac
ggccagaaaggaccaatgggattcccagggccacaaggaccccatggatttcctgggcca
cctggagaaaagggtttacctggacctccaggtcaacaaggaccccctggtcctccaggt
tccaggggtgaacctgggccacctgcagatgcagatgcctgccctcgaatcccaggactt
cctggggtgccaggcccaagaggaccagaaggagccatgggggtccccggaacaagaggt
cccccaggaccagagtgcaaaggagagcccgggctggatggcaggaggggcgagcctggc
attcctggggcacctgggcctccaggaagcaagggtgacacaggagaagctggctgccct
ggagcaccaggccctcctggtcctgttggcgatcctgggcccaaagggtttggacttgga
tatctcagcggcttcctcctggttctccacagtcagacagatcaagaaccctcctgccca
gtgggtatgcccaagctctggacagggtatagtctgttatacctggaaggacaagagaaa
gctcacaatcaggatcttggtctggcagggtcttgcctccccatgtttagcacactgccc
tttgcctactgcaacacccaccaagtgtgccactatgcccagaggaatgacaaatcctac
tggctggccagcgctgcccccctacccatgatgccgctctcagaagaggaggtccgccca
tacatcagccgctgtgccgtgtgtgaggccccagcccaggtggtggcagtgcacagccag
gataaatctatacccccgtgtccacggtcctggaggagcctctggattggatattcattc
ttgatgcacacaggagctgggtctcaaggcggaggacaggccctcatgtcaccgggtagc
tgtctggaagatttcagagcagcgccattcctcgaatgccaaggccggcagggaacgtgc
cacttttttgcaaatgagtatagcttctggctgacaacggtgaaaccagacttgcagttc
tctgcaccgtcaccagacaccttaaaagaaagccaggcccagcgccagaagatcagcaga
tgccaagtctgcgtgaagtatagctag
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integrated database retrieval system
