Trichechus manatus latirostris (Florida manatee): 101359491
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Entry
101359491 CDS
T05135
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04611
Platelet activation
tmu04820
Cytoskeleton in muscle cells
tmu04926
Relaxin signaling pathway
tmu04933
AGE-RAGE signaling pathway in diabetic complications
tmu04974
Protein digestion and absorption
tmu05146
Amoebiasis
tmu05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101359491
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
101359491
09152 Endocrine system
04926 Relaxin signaling pathway
101359491
09154 Digestive system
04974 Protein digestion and absorption
101359491
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
101359491
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
101359491
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101359491
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101359491
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101359491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
101359491
NCBI-ProteinID:
XP_023595663
UniProt:
A0A2Y9RVI4
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MMSFVQKGTWLLLALLHPTVILAQQNQEAGDGGCSHLGQSYADRDVWKPEPCQICVCDSG
AVLCDDIICDEQDLDCPNPEIPFGECCAVCPQPPTVPTRPTDGQGARGPKGDPGPPGIPG
RNGDPGIPGQPGSPGSPGAPGICQSCPTGGQNYSPQYDSYDVKAGGGAVIAGYPGPAGPP
GPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPTGPPGPPGAIGPAGPSGKDGESGRPGRT
GERGLPGPPGVKGPAGMPGFPGMKGHRGFDGRNGEKGEPGAPGLKGENGLPGENGAPGPL
GPRGVPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTVGFPGSPGAKGEVGPAGSP
GANGSPGQRGEPGPQGHAGAQGPPGPAGSSGSPGGKGDMGPAGIPGAPGLMGARGPPGPS
GTNGIPGVRGSPGEPGKNGAKGETGPRGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLP
GTAGERGAPGFRGPAGANGLPGEKGPAGERGGPGPAGARGIPGEPGRDGLPGGPGMRGMP
GSPGGPGSDGKPGPPGIQGESGRPGPPGSPGPRGQPGVMGFPGPKGNDGAPGKNGERGGP
GGPGPQGPAGKNGETGPQGPPGPTGASGDKGETGPPGPPGIQGLPGTSGPPGENGKPGEP
GPKGDSGSPGTPGGKGDSGAPGERGPPGQAGPPGLRGGTGPPGPDGGKGPAGPPGPPGTS
GSPGLQGMPGERGGPGGPGPKGDKGEPGSSGIDGAPGKDGPRGPVGPIGPPGPPGQNGDK
GEAGTPGPPGPAGARGGSGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGPP
GAAGPPGDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGAGAVG
LAGAEKAGGFAPYYGDDPMDFRINTEEIMSSLKSVNGQIESLISPDGSRKNPARNCRDLK
FCHPELKSGEYWVDPNQGCKLDAIKVFCKMETGETCINASPSNVPQKNWWTNSGAEKKHV
WFGESMGGGFQFGYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNSIAYMDQATGNV
KKALKMMGANEGEFKAEGNSKFTYTVLEDGCTKHTGEWGKTIFEYRTRKAVRLPIVDIAP
YDIGGPDQEFGVDIGPVCFL
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaggggacctggctacttcttgctctgcttcatcccactgtt
attttggcacaacagaaccaggaagccggtgatggaggatgctcccatcttggtcagtcc
tacgcggatagagacgtctggaagccagaaccatgccaaatatgcgtctgtgactcagga
gctgttctctgcgatgacataatatgtgatgaacaagatttagattgtcccaacccagag
atcccatttggagaatgttgtgcggtttgcccacagcctccaacagttcctactcgccct
actgatggtcaaggagctcgaggccccaaaggagatccaggccctcctggtattcctggg
agaaatggtgaccctggtattcctggacaaccagggtcccctggtagtcccggtgcccct
ggaatctgtcaatcatgccctaccggtggtcagaactattctccccagtatgattcatat
gatgtcaaagctggaggaggagcagtgatagcgggctatcctgggccagctggtccccca
ggccctcctggtccccctggtacatctggccatcctggctcccctggttctccaggatac
caaggtccccctggtgaacctggacaagctggtcctacaggccctccaggacctcctggt
gctataggtccagctggtccctctggaaaagatggggaatccggaagacccggacgaact
ggagagcgaggactgcctggacctccaggtgtcaaaggtcctgctggcatgcctggattc
cctggtatgaaaggacacagaggctttgatggacgaaatggagaaaagggtgaaccaggt
gctcctggattaaagggcgaaaatggtcttcccggtgaaaatggagctcctggaccactg
ggtccaagaggggttcctggtgaaagggggcgacctgggcttcctggagctgcaggggct
cgtggtaatgatggtgctcgaggcagtgatggtcaaccgggtccccctggtcctccagga
actgtgggattccctggttcccctggtgctaagggtgaagttggacctgcagggtctcct
ggtgcaaatggctcgcctggacaaagaggagaacctggacctcagggacatgctggtgct
caaggtcctcctggccccgctgggagcagtggtagtcctggtggtaaaggagacatgggt
cctgcgggcattcctggagctccaggactgatgggagctcggggtcctccaggaccatct
ggtactaatggcattcctggagttcgaggtagcccgggcgaaccaggtaagaatggtgcc
aaaggagaaacaggaccacgtggtgaacgcggtgaagctggttctccaggtatcccaggg
cctaaaggtgaagatggcaaagatggttctcctggagaacctggtgcaaatggacttcca
ggaactgcaggagaaaggggtgcccctggattccgaggacctgctggcgccaatggcctt
ccaggagaaaagggtcccgctggggaacgtggtggtccaggtcccgcaggcgcaagagga
attcctggagaacctggccgagatggtctacctggaggtccaggaatgaggggtatgccc
ggaagcccaggaggtccaggcagcgatgggaaaccaggacctccaggaattcaaggagaa
agtggccgaccaggtcctccaggctcacctggtccccgaggtcagcctggtgtcatgggt
ttccctggtcctaaaggaaatgatggtgctcctggcaagaatggagaacgaggtggccct
ggaggacctggacctcagggtcctgctggaaagaatggtgaaactggacctcagggtccc
cccggacctaccggtgcatctggtgacaaaggagaaacaggaccccctggtccacctggt
atacaaggcttgcctggtactagtggtcctccaggagaaaacggaaaacctggtgaacca
ggtccaaagggtgattctggttcacctggaactccaggaggcaagggtgattctggtgcc
cctggtgaacgcgggcctcctggacaggcagggcccccagggcttagaggtggaactgga
ccccctggtcctgatggaggaaagggccccgctggtcctcctgggccacctggtacttct
ggttctcctggtctacaagggatgcctggagaaagaggaggtcctggaggtccaggccca
aagggtgacaagggtgaaccaggcagctcgggtattgatggtgctccagggaaagatggt
ccaaggggtcctgttggtcccattggtccccctggcccacctggacagaatggagataag
ggtgaagctggtacccctggacctccaggtccagccggagctcgtggtggctctggtgag
agaggtgaacacggacctccagggcctgctggtttccctggtgctcctggacagaacggc
gagcctggtgctaaaggagaaagaggtgctcctggtgagaaaggagaaggaggccctcct
ggagctgcaggacctcctggagatggaacaagtggacatccaggtcccattggaccacca
gggcctcggggtaatagaggtgaaagaggatccgagggctcccctggccacccaggacaa
ccaggccctcctggacctcctggtgcccctggtccatgctgtggtgcgggtgctgtcggc
ttggctggagctgaaaaggctggtggttttgccccatattatggagatgatccaatggat
ttcagaatcaacactgaagagattatgtcttcactcaaatcagttaatgggcaaatagaa
agcctcattagccctgatggttctcgtaaaaatcctgctcggaactgcagagacctgaaa
ttctgtcatcctgaactcaagagtggagaatattgggttgaccctaaccaaggttgcaag
ttggatgctatcaaagtattctgtaaaatggaaactggggaaacatgcataaatgccagt
ccttcaaatgttccacaaaagaactggtggaccaattctggtgctgagaagaaacacgtt
tggtttggagagtccatgggtggtggttttcagtttggctatggcaaccctgaacttcct
gaagatgtactcgatgtccagcttgcattcctccgacttctatccagccgggcctcccag
aacatcacataccactgcaagaatagcatcgcatatatggatcaggccactgggaatgta
aagaaagccctgaagatgatgggagcaaatgaaggcgaattcaaagctgaaggaaacagc
aaattcacatacacggttctagaggatggttgcactaaacacactggggaatggggcaaa
acaatcttcgaatatcgaacacgcaaggctgtgagactacctattgtagacattgcaccc
tatgatattggtggtcctgatcaagagtttggtgtggacattggccctgtttgcttttta
taa
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