Trichechus manatus latirostris (Florida manatee): 101359702
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Entry
101359702 CDS
T05135
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101359702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101359702
Enzymes [BR:
tmu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101359702
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101359702
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
FTA4
Motif
Other DBs
NCBI-GeneID:
101359702
NCBI-ProteinID:
XP_004373325
UniProt:
A0A2Y9DES8
LinkDB
All DBs
Position
Unknown
AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRLQSNGAGALSFASPNTSKCPVMVPEEQKKF
IDQVVEKIEDLLQSDENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKELEGLNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFVSMANYLGSFLSPPKIHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKNEEKQIKRKWTEDSWKEVERKRLN
TQCISCALQNHCYRTNSFTATGTVVKRNLSPSLEEAGLEDSASGEVSDAELEKTDSCAET
LSEGRKKAKKLKRMKKELSPAGSISGSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaaataatcaggagtaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggctgacttcttcgccatcgatggggagttctcaggaatcagtgatggaccttcagtc
accgcattaacaaatggttttgacactccagaagaacggtatcagaagctcaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatataacaaagtcatttaacttttacgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcgagccaagga
tttgatttcaataaggtttttcgcaatggaattccatatttaaatcaggaagaagaaaga
cagttaagagagcagtatgatgaaaaacgtttgcagtccaatggtgcaggagctctgtca
ttcgcgtctcccaacacttcaaaatgtcctgtgatggttcctgaggagcagaagaagttt
attgaccaagtggtagagaaaatagaagatttgttacaaagtgatgaaaacaagaacttg
gatttggagccgtgtactgggttccaaagaaaactgatttatcagactctgagctggaag
tatcccaaaggcattcacgttgagactttagaaactgaaaagaaagagcggtatatagtt
atcagcaaagttgatgaagaagaacgcaaaagaagagagcaacagaaacacgctaaagaa
ctggagggactgaacgacgctgtgggattttctagagtcattcatgccattgctaattca
gggaaacttgttattggacacaacatgctcttggatgtcatgcacacggttcatcagttc
tactgcccgctgcctgcggacttaaatgagtttaaggagatgacaacatgtgtcttcccc
agactcttggatactaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacacctttcaatcctcctaaagtt
gaaagtgcagaaggttttccaagttacgacacagcttctgagcagcttcacgaagcaggc
tatgatgcatatatcactggactgtgtttcgtctccatggcaaactacctaggttctttt
ctcagtcctccaaaaattcacgtgtctgccagatccaaactcattgaacctttttttaac
aagttatttcttatgagggtcatggatatcccctatctaaacttggaaggaccagacttg
caacctaagcgcgatcacgttctccacgtgaccttccccaaagaatggaaaaccagtgac
ctttaccagcttttcagtgcctttggtaacattcagatatcctggattgatgacacatca
gcgtttgtttctctcagccagcctgaacaagtacaaattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctacgctgaatatgtggggaaaaaaaatgaggagaag
cagatcaagagaaagtggacagaagatagttggaaggaggttgagagaaagcggttaaac
actcagtgtatatcctgtgctctgcagaatcactgttaccgcaccaacagttttacagct
accggcacagtagtaaagagaaatctgagtcccagtctagaggaagctggcttggaggac
agtgcgtcaggggaggtttctgacgctgaacttgagaagacagattcctgtgcagaaacc
ctctcagagggaaggaaaaaggccaagaaattaaaaagaatgaagaaagagctttctcca
gcaggaagcatctcgggcagctccgccaagctctttgaagtccctgatacgtggtaa
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