Trichechus manatus latirostris (Florida manatee): 101359853
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Entry
101359853 CDS
T05135
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60-like isoform X2
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101359853
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101359853
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101359853
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
101359853
NCBI-ProteinID:
XP_012414681
UniProt:
A0A2Y9G1H6
LinkDB
All DBs
Position
Unknown
AA seq
1723 aa
AA seq
DB search
MFNNREFYSKAYTTVTMGLRQHTVFLKKMTQFILQEMPKARYSSLLNDFVESNYFVIDGD
SLLVTCLGDKSFKRGQDLHFFYLVECYLVDLMRNGAQFGIIFFEDAECAYFPFPELLPLR
TALILHLQHNTNIDVQTEISGCLSLEWELFLEERHPYFLIVSDEGLNDLQTHLFNFLIIH
SWGMGVHVVLSSGQESDSLKLYAYIMQSTKRNQKFSKENQMMSQSAYKSLIQHLEEDKIL
ALTSHFGHLRWEDMVEEAHETIFLLRQLWPQGSDIRSVLCVTLCSLSLGRYHCFLENKKK
RASDQETSVRQVDTDCSALQEVEDLCRLHCLSIAFLLRLPLSQRAQTRVITSHWIQNIQT
FLKMKKWCEYFILRNISKFGSWNLNLKHLSDLNDEHLLKNIAFFYETENVQEIYLNLGDF
IKRDYEHLWNSVSHLVKEFNVGKPFPLRTTAGYFLGKTSSPIQEISSENMSNLGFIPMTS
AIIDMFLGDTLKDLPFLKSDDPVVTSLDKPKKSVVRFRLRTHTTLSDDYDMTKCHFDEKS
TDSHYVNHQQKKMAYQRFYGKSLESVSAKVIVTQTSHPEEESSRKKTSHDTKPKKLTKKQ
TRRLMCQEQKEEELRNDLVSSIHKEMRENLNSGIKKLEDCLKSCSRIPEKLELEMVGLTV
CFETWKEHCRGEGKISKDLSIAVHMMERIYSLLQRYEGFLLKQDYEFIAKCLKYLGFNDM
ANSLDPTLQMTDKKKKKKDKYSIDIGPARFQLQYTGHCLMRDEREDLDPRVQEFIPDAWQ
RELLDVVDNNESAVVVAPTSSGKTYASYYCMEKVLKESDDGVVVYVAPTKALVGQVAATV
QNRFTKTLPNDTALCGVYTPDYRCDALNCQVLVTVPACFEILLLAPHRQYWVERIRYVIF
DEVHCLGGEIGGKYWERILVMIQCPFLVLSATISNPAHLTEWLKSVKQYWKQADKIMEEE
FISKKKSGQRSNSLKDNLCINQSYEVRLVIYGERYNDLEKHVCSVKHDDVSFDHYHPCAA
VTTDYIEKYGFPCDLTLSPRESIQLYDVMVQVWNTWPRAQELDPEKFSLFKNKAFIKKLD
ARKYEEILKAELTSWVKNGNIRKAERVLENLSPESVSDSKDMVKMFPLLVEKLRKLNKLP
AIVFGFRNGDLEAIAGSLCTFLEEKPESKSPLRTDECHSYDADIAKCLKKEKEINAKQNK
IKANDQQKARKLERKLTYTAEHIHFLKNLKKIQEVPQDCTYGDVNALDTKSLKAVFEQVE
STRNGKKLKTLAQRGIGFHHNSMYFKEKEFVEILFAKGFIKVVTATGTLALGIHMPCKSV
VFVQDSVYLDGLNYRQMSGRAGRRGQDLLGDVYFFGIPLPKIERLMTSNVPELRGQFPLS
TTLVLRLMLLASKTDNANAKVLSVLKHSLLSYKQPKVTKMLKLYFLFSLQFLVKEGYLNQ
KGKPMRFARLVARLCGHEPSNFIFVSFLERGLFHKLCQPTRRGFPQNVVETLMLVLANLF
GRKYIPVKSQDANFRFTQSEVILDELPEDFKAALQEYNLKVAKDFASFLLISSKLVNVRN
ECRLPLSRIKFTGEEYEDSQLVSNLMNCKEGRVAISPFACLSGNTDGNLLQPEIVNHVVL
RTVGSSVMQAPVLWSQKIDNQGRRMPLSAYALDFYKHGSLTELTRDTGMSPGELLRLLKD
FAFYIKTISYSLSELCENKDDNVVLAFRQLSQIFYEKLQKVQN
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataaccgcgagttctattctaaggcctacacaacagtaacgatgggattaaga
caacatacagtgtttttaaagaaaatgacacagtttattttgcaagaaatgccaaaagct
cggtattccagtttattaaatgattttgttgaatctaattattttgtgatcgatggagat
tcgttgcttgtcacatgcctaggtgacaaatcgttcaagcgagggcaggatctccacttc
ttctatctggttgaatgctatcttgtggacttgatgaggaatggagcacagtttggtatc
attttcttcgaggatgctgaatgtgcctattttccttttcctgaacttcttccactgaga
actgctttaattctccaccttcaacacaatactaacatagatgttcaaaccgagatttct
ggatgcttatcactagagtgggaacttttcttggaagagcgtcacccgtatttcttgata
gtttcggatgaaggcctgaatgatctacaaacacacctttttaactttttaattatacac
tcctggggaatgggagtccatgttgtgctctcgtcggggcaagaatctgatagtctcaaa
ctttatgcgtacattatgcagagcacgaagagaaaccaaaagttttctaaggagaatcaa
atgatgagtcagagtgcttataaaagccttatacaacacttggaagaagacaaaatttta
gcattaacatctcactttggacatttaagatgggaagatatggtagaagaggcacatgag
actatctttctgctcaggcaactctggccacaaggctctgatatccggagtgttctctgt
gttactttatgttcattgtccttgggaaggtaccattgcttcttagaaaacaaaaagaag
agagcctccgatcaggaaactagtgttcgtcaggtggacactgattgctcagcgctgcag
gaggtggaagatctgtgtagactacactgcctcagcatagcttttctgctccgcttacct
ctatctcaaagagctcagacccgagtcatcacttcccattggattcagaatattcagact
ttcttaaaaatgaaaaaatggtgtgaatactttattctaagaaatataagcaaatttgga
tcttggaatctgaatctaaagcatctttctgacctaaacgatgagcatttgttaaagaat
attgcctttttctacgaaacggaaaatgttcaagagatatatttgaatttgggagatttc
attaagagagattatgaacacttgtggaattctgtgtcccacctggttaaagaatttaat
gttggaaagccttttcctttgagaacaacagcaggatattttcttggaaagacatcatca
ccaattcaagaaatctcctcggaaaacatgtctaatttgggttttattccaatgacatct
gctataattgatatgtttcttggagacacgctgaaggatttgccttttctaaagagtgat
gatccagttgttacttcactagataaaccaaagaaatctgttgtacgttttcgcttgcgt
actcacacgacccttagcgatgactatgacatgaccaagtgtcactttgatgaaaaatct
acagacagtcattatgttaatcaccagcagaagaaaatggcttatcagcgattttatggg
aaatcattagaatctgtctctgcaaaagtcattgtaactcaaacttcccatccagaggaa
gagtccagtagaaagaaaacgtcacatgataccaaacccaaaaaacttaccaaaaagcaa
accaggaggctaatgtgccaagaacagaaagaagaagaactacggaatgatctagtatct
tctattcacaaagagatgagagagaatttaaattctggaataaagaaattagaggattgt
ttgaagtcatgttcaaggattccagagaaattggaacttgaaatggtaggattgaccgtc
tgctttgaaacatggaaagaacactgccgaggtgaaggcaagatttcaaaagatctaagt
atagctgttcatatgatggaaaggatctattcactcctgcaaagatacgaaggattttta
ttaaagcaagattatgaatttatagccaaatgccttaaatatttaggttttaatgatatg
gcaaactctttagatccaactctgcagatgacagacaagaaaaagaagaaaaaggataaa
tattcaattgacattggaccagctagatttcaactccaatacacaggccattgtttgatg
agagatgagagagaagatctagatcccagggtccaggagtttattccagacgcatggcag
cgagagctcctggatgttgtggataataatgagtcagcagtggttgttgccccaacgtcc
tcaggcaaaacctatgcttcttactactgcatggagaaggtgctgaaggagagcgatgac
ggtgtggttgtgtatgtggcaccaacaaaggctcttgttggtcaagtggcagcaactgtt
cagaaccgttttactaaaacgttgccgaacgatacagctttatgtggtgtttacacgccg
gattaccgttgcgatgcactaaactgtcaggtacttgttacggtgcctgcgtgttttgaa
attctgctgcttgctcctcatcgccaatattgggtagaaaggatcagatatgttatattt
gatgaggtccattgtcttggtggagaaattggaggaaaatattgggagcgcatccttgtc
atgattcaatgtccatttctggtcctttcagctaccataagcaaccctgcacatctcact
gagtggctaaaatcagtaaaacagtactggaaacaggcagacaagattatggaagaagag
tttatttctaaaaaaaagtctggccaacgttccaactctctcaaagataatttgtgtata
aatcaatcatatgaagttagacttgtgatctatggagagagatacaatgatttagaaaag
catgtatgttcagtaaaacatgatgatgtctcttttgatcattatcatccatgcgccgca
gtgacgacagattatattgaaaaatacggatttccttgtgatcttaccctctcacctcga
gaaagcatccaactttatgacgtcatggttcaagtctggaacacctggcccagagctcag
gaattggatccagagaaattcagtctttttaagaataaagcgttcattaaaaaattggat
gctagaaaatatgaagaaattctaaaggcagaattaacaagctgggtgaaaaatggcaat
ataagaaaggccgaaagagtactggagaatctcagccctgaatcagtatctgattcaaaa
gatatggtaaaaatgtttccccttcttgttgagaagctaagaaaattgaataagttacct
gcaatagtttttggttttaggaatggtgatttggaagcaattgctggaagtttgtgcact
tttctggaagagaagccagagagtaaaagccctctcagaactgacgagtgtcatagctat
gatgctgacatagctaaatgccttaaaaaggagaaagaaatcaacgcgaaacaaaataaa
atcaaagcaaatgatcagcaaaaggctagaaaattggaaaggaagctaacgtatacagct
gagcatattcatttcctgaagaatttgaagaagattcaggaagttcctcaggactgcacc
tacggtgatgtgaatgcgctggacaccaagtctttgaaagcagtgtttgaacaagtagaa
tcaacgagaaatggcaagaagttgaagactttggcacaaaggggtattggatttcatcac
aactccatgtattttaaagaaaaagagtttgtggagatactctttgcgaaagggtttatc
aaggtggtgacagctactggaactcttgccttaggaatccatatgccctgtaaatctgtt
gtttttgttcaagactcagtctacctggatggtttaaattacagacagatgtctggacgt
gctggaagacgaggtcaagacctgctgggagatgtgtatttctttggtattccactgccc
aaaatagaaagactcatgacatccaacgttcctgagctcagaggacagttcccactcagc
acaaccctggtcctgagacttatgctgttggcttccaagacagataatgccaatgcaaag
gtgctgtcagtgctgaagcattcactgttgtcctacaagcaacctaaagtcacgaagatg
ttgaaactttacttcttgttttctttgcaattcctggtgaaagagggctatttaaatcaa
aaaggtaaaccgatgaggtttgcaagactcgtagcacgtttgtgtggccatgaaccgtct
aattttatctttgtgagttttcttgagagaggtcttttccataaactctgtcagccaacc
aggagaggatttcctcagaatgtggtggagactctgatgttagtattggccaatttgttt
ggaagaaaatatattccagtgaaatctcaagatgctaatttcagatttactcaatcagag
gtgatccttgacgaactcccggaggattttaaagctgctttacaggagtataatttgaaa
gtggcaaaggactttgcttccttcctactgatttcttccaagctggtgaacgtgagaaac
gaatgtcggctcccgttgtcaagaatcaaattcacaggtgaagaatatgaagactcccaa
ctggtgtctaacttgatgaactgcaaggaaggaagagtggccatttcaccatttgcttgt
ctgtctgggaatacagatggcaatttgcttcagccagagattgtcaaccatgtcgttctg
cgcacagtcggttccagtgtcatgcaggctcctgtgctgtggtcacagaagattgataac
caaggaagaagaatgccacttagtgcttatgcacttgacttctataagcatggctccttg
acagaattaacacgagatactgggatgtctcctggagaacttttaagacttctaaaagat
tttgcattctacatcaaaactatcagttattctttgagtgaactatgtgaaaataaggat
gacaatgttgtcttggcatttagacaactgagtcaaatcttctatgaaaaacttcaaaaa
gtccaaaactga
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integrated database retrieval system
