Trichechus manatus latirostris (Florida manatee): 101361229
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Entry
101361229 CDS
T05135
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04382
Cornified envelope formation
tmu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101361229
09158 Development and regeneration
04382 Cornified envelope formation
101361229
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
DUF2868
Motif
Other DBs
NCBI-GeneID:
101361229
NCBI-ProteinID:
XP_004370170
UniProt:
A0A2Y9D8W0
LinkDB
All DBs
Position
Unknown
AA seq
1485 aa
AA seq
DB search
MDVTKKNKRDGTEVTERIITETVTTRLTSLPPKGGTSNGYAKTGSLGGGSRLEKQSLTHG
SSGYINSSGSSRGNASTSGYRRVHSPASTLPNSPGSTFERKTHITRNATYEGSSSGNSSP
EYPRKEFASSSTRGRSQTRESEIRVRLQSASPSSRWTELDEVKRLLKGSRSASTSPTRNC
SNTLPIPKKGTVETKTVTASSQSVSGTYDATVLDANLPSHVWSSTLPAGSSMGTYHNNMA
SQSSSLLNTNAYSAGSVFGVPNNMASCSSTLHPGLSSCSSVFGMQNNLAPSSTTLSHGTV
TTSTAYGVKKNMPQSPAVVSTGTSTSAACTTSAQNDDLLHKDCKFLILEKDNVPTKKEME
LLIMTKDSGKVFTASPASIAATSFSDDTLKKEKQAAYTADTPLKSDANGDPKTASTKGKA
TYAEIHGYDHSGVGSGGGGKGLWGAAPAWCPCGSCCSWWKWLLGLLLTWLLLLGLLFGLI
ALAEEVRKLKARVDELEKTKTSMIHFEDKMQRSSKERLQGVAPGVGTDLGIGGLDGHSQE
ALWMFVKNKLMTEQENGNLRGSPGPKGDMGSQGPKGDRGLPGTPGIPGLLGHPGPEGPKG
QKGSMGEPGMEGPMGQRGREGPPGLRGDPGPPGFGEKGDRGAVGEPGPQGPPGVPGSVGP
KGSSGSPGPQGPPGSIGLQGLRGEVGLPGVKGDRGHMGPPGPKGDHGEKGSRGLTGEPGL
RGLPGAVGEPGAKGAMGPTGLDGQQGPRGEQGLTGMPGIRGSPGPSGDPGKPGLTGPQGP
QGLPGSPGQPGPKGEPGAPGSIVTADGSSTITVPGPPGPPGAMGPPGPPGSPGPAGPAGL
PGQQEGLDLRGPPGPRGPPGPPGPSIPGPPGPRGPAGEGLPGPPGPPGSVLTSSETLLSG
PPGPPGPPGPKGDQGLPGPRGHKGEQGLPGFSTSGSSSLGFNLQGPPGPQGPKGDKGDPG
VPGAPGIPGGLSRGGSSSATYIPGPPGPPGPPGPPGSISSSGREIQQYISEYMQSDSIRS
YLSGVQGPPGPPGPPGPVITITGETFDYSELASSVVSYLQTSGYSIGTASASISSEDILA
ALQRDDVRQYLQQYLMGPRGPPGPPGASGDVSLLSLDYAELSSRILSYMSSSGISIGLPG
PPGPPGLPGTSYEELLSLLRGSEFGGIVGPPGPPGPPGLPGNAWSSISVEDLSSYLHTAG
LSSIPGPPGPPGPPGPRGPPGVSGALVNYATENRDSFRSELISYLTSPDVRSFIVGPPGP
PGPQGPPGDNRFLSAEGSYSGGSSSSSRSSSVQQGTSHRSSAGIGGASRGSLGEGGAFGV
GDGGPYGTDIGLGGGYGTAAEGGMYGGNGGSFGAGFAGGLDYNELAVRVSESLQRQGLLQ
GMAYTVQGPPGRPGPQGPPGISKVFSAYSNVTADLMDFFRIYGTIPGPPGQKGEVGTPGP
KGEMGPAGPPGRPGPPGPRGHKGEKGDKGDQVYVGRRRRSIASKP
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atggatgtaaccaagaaaaacaaacgagatggcactgaagtcactgaaagaattatcact
gaaacagtaactacaagactcacttctttaccaccaaaaggggggaccagcaatggctat
gcgaagacaggctctcttggtggagggagccgactggagaaacagagcctgacgcacggc
agcagtggctacataaactcaagtggaagctccagaggcaatgcctctacctccggttat
aggagggtccattcacctgcctcgactctgcccaactcaccaggctcaacctttgaaagg
aaaactcacatcacccgcaatgcaacatacgaagggagctccagtggaaactcttctccg
gagtaccctcggaaggaatttgcatcttcttcaaccagaggacggagccaaacacgagag
agcgaaattcgagttcgactgcagagtgcatccccatcttcccgatggacagaattggat
gaagttaagcgtttgctcaaggggagccgatcagcaagcacgagccccacacggaactgc
tccaacacactccccatccccaaaaagggcactgtggagaccaaaacggtgacagcaagc
tcccagtcagtgtcgggcacctacgacgcaacagtcctggatgccaaccttccctctcat
gtatggtcctccaccttgcctgcgggatcctccatgggaacctatcacaacaacatggca
agccagagctcatcgctcctcaacaccaacgcctattctgcaggatcagtctttggagtt
ccaaataacatggcgtcctgctcttccacactgcaccccggactcagcagctgctcctca
gtgtttggcatgcagaacaatctggcccccagctcgaccaccctatctcatggcacagtc
actacttccacagcatacggtgtgaagaagaacatgccgcagagccctgctgttgtgagc
accggcacgtccacctctgccgcctgcaccacaagtgcccagaatgatgaccttttgcac
aaggactgtaagttcctgatcctggagaaagacaacgtgcccaccaagaaggagatggag
ctgctgatcatgacaaaggacagcgggaaggtcttcactgcctccccggcgagcatcgct
gcaacttctttttcagatgacaccctaaaaaaagaaaagcaagccgcctacactgctgac
acccccttgaagtctgatgctaatggagacccgaagacagcgtctaccaagggcaaggcc
acctatgcagaaatccacggctacgaccacagtggtgtcggcagtggtggtggtggcaaa
ggcctgtggggggcagcgccagcctggtgtccctgtggctcctgctgcagctggtggaag
tggctgctgggcctgctgctcacctggctgcttctcctggggctgcttttcggcctcatc
gctctggcggaggaggtgagaaagctgaaagctcgagtggatgaactggagaaaaccaag
accagtatgatacattttgaggacaagatgcagaggagcagcaaggaacgtctccagggt
gtcgcacccggggtgggaacagacctggggataggtgggctggatggccacagccaggag
gcactctggatgttcgtgaagaacaagctaatgacagaacaagaaaatggaaatctccga
ggaagccctggccctaaaggtgacatgggaagtcaaggccctaaaggtgatcgaggactc
ccggggactccaggtatccctgggctcttgggccacccaggtccagaaggaccaaaggga
caaaaaggcagcatgggagagcctggcatggagggacccatgggccagagagggcgagaa
ggtcccccaggactccgtggtgacccagggcctcctgggtttggcgagaaaggagacaga
ggtgctgttggtgagccaggacctcagggcccacctggtgtcccaggttctgtgggtccc
aaaggttccagtggttctcctggcccacagggccccccaggttctataggcctccaaggg
ctccgaggtgaagtgggactccctggtgtcaaaggtgacagaggacatatgggaccacca
ggacccaaaggtgaccatggcgagaaaggatcccgaggactcacaggcgagcctggcttg
agaggtttgcctggtgctgtgggtgagcctggggctaaaggagcaatgggtcccactggc
ctcgatggacaacaaggcccaagaggtgaacaaggtctcacagggatgcctggaattcgt
ggctcaccagggccttctggagacccaggaaagccaggtctcacaggaccccaaggacct
cagggacttcctggtagccccggccaaccagggcctaaaggtgaaccaggagctccaggc
agcatcgtgactgcagacgggtcatcgactatcactgtcccaggccccccaggacctcct
ggagctatgggacccccaggacctccaggttccccaggtcctgccggccctgctgggctt
ccaggacagcaagaaggtcttgatttacgaggtcccccaggtccacgtgggccacctggg
ccaccaggaccttccattccaggccctccaggaccccgaggcccagcaggtgaaggattg
ccaggcccaccaggcccgccaggatctgtccttaccagctcagaaaccttactctctggt
cccccaggcccacctggccccccaggccccaagggagaccaagggctcccaggtccccga
ggacacaaaggcgagcaaggcctcccaggcttctcaacttcaggttccagttctctcgga
ttcaacctacagggaccccccggccctcaggggcccaagggtgacaaaggtgatcctggt
gttccaggggcgcctggcattcctggtggtctgtctcgagggggatcatccagtgccaca
tacataccgggcccaccaggcccgccggggcctcctgggccaccaggctccatcagcagc
tctggccgggagattcagcagtacatctccgagtatatgcagagtgacagtattaggtct
tatctctctggagttcagggtcccccgggcccacctggtcccccagggcctgtcatcacc
atcacaggcgagacttttgactactcggagctggcgagcagtgttgtgagctacttacag
acctcagggtacagcatcggtacagcctccgcctccatctcctctgaagacatcctggct
gcgctacagcgggatgatgtgcgtcagtacctacagcagtacctgatgggtcctcgaggg
ccaccggggccaccgggagccagtggagatgtgtccctcctgtctctggactacgcagag
ctgagcagccgcatactcagctacatgtctagctctggaatcagcattgggcttcctggc
cccccgggcccccctggcttgccgggaacatcctatgaggagctactctccttgctccga
gggtctgaatttggaggcattgttggacccccaggtccccctgggccaccagggctgccg
ggcaacgcgtggtccagcatcagcgtggaggacctctcatcttacttgcatacggccggc
ttgtcatccatcccaggccctccaggccctcctggtcccccaggtcctcgagggccccca
ggcgtctcaggagctctggtgaactacgcaactgaaaacagggacagcttccggagtgaa
ctgattagctacctcacaagtcctgatgtgcggagcttcattgtcggccccccaggccct
ccggggccccagggaccacctggagacaaccgtttcctgtcagcggaaggctcctacagt
gggggtagcagctcttcctcacgaagctcatcggtccaacaaggaacctcccacaggtct
tcagcaggcatcggaggagccagcagaggctccctgggcgaagggggagcctttggtgta
ggagacggaggcccctatggcactgacatcggcctgggcggaggctatgggacagcagca
gaaggtggaatgtacggtggcaatggaggatcattcggggccggctttgctggaggcctg
gattacaatgagctggctgttcgggtgtcagagagcctgcagcgtcagggcctgctgcaa
gggatggcctacactgtgcagggcccaccaggccggcctggcccccagggaccccctgga
atcagcaaggtcttctctgcctacagcaacgtgactgcggacctcatggacttcttccga
atttatggcaccattccaggaccccctggacagaagggagaggtgggcaccccaggaccc
aaaggtgagatgggccctgcaggaccaccaggacggcctggcccacccggccctcgaggt
cacaagggggaaaaaggagacaaaggtgaccaagtctatgttgggcggagaaggagaagt
attgccagcaagccatga
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