Trichechus manatus latirostris (Florida manatee): 101361458
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Entry
101361458 CDS
T05135
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03013
Nucleocytoplasmic transport
tmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101361458
03015 mRNA surveillance pathway
101361458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101361458
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101361458
5.6.2.5 RNA 5'-3' helicase
101361458
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101361458
mRNA cycle factors
Common to processing body (P body) and stress granule
101361458
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101361458
NCBI-ProteinID:
XP_004384430
UniProt:
A0A2Y9DZM6
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGSGAGGAG
GPGGAGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSSMYFQ
THDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPATGRGTPKGKTGRGGRQ
KNRFGLSGPSQTTLPSSQASQDVVSQPFSQGALTQGYVSMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVPGLSQY
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagaggcgtacgggcccagttcgcagacgctcacctttctggacacggaggag
gcagagttactgggcgccgacacacagggctccgagttcgaattcacggacttcaccctc
cccagccagactcagacgcccccaggcggccccggaggatccggggcgggaggcgccgga
ggcccgggcggcgcgggcgctgcggccggacagctcgacgcgcaggttggcgggcccgag
ggcatcctacagaatggggctgtggatgacagtgtggccaagaccagtcagctgctggcc
gagctgaacttcgaggaggatgaggaggatacctactacaccaaggacctcccagtccat
gcctgcagttactgtgggatccatgaccctgcgtgcgtggtctactgcaacaccagcaag
aagtggttctgcaacgggcgcgggaacacctccggcagccatatcgtcaaccacctcgtg
agggcaaagtgcaaggaggtgacactgcacaaggatgggcctctgggcgagacggtgctt
gagtgctacaactgcggctgccgcaatgtcttcctgctcggcttcatccctgccaaggct
gactcggtcgtggtactgctgtgcaggcagccgtgtgccagccagagcagcctgaaagac
atcaactgggacagctcccagtggcagccgctgatccaggatcgctgcttcctgtcctgg
ctggtgaagatcccttcggagcaggagcagctgcgggcacgacagatcactgcgcagcaa
atcaacaagctggaggagctctggaaggagaacccgtcagccacactggaggacctggag
aagccaggcgtggatgaggagccacagcacgtgctgctgcgctatgaggacgcctaccag
taccagaatatctttgggccactggtcaagctggaggctgactacgacaagaagctcaag
gagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagaga
atcgcctacttcactttgcccaagactgactctgacatgcggctcatgcagggcgatgag
atctgcctgcgctacaagggggacctggcgcccctgtggaaagggatcggccatgtcatc
aaggtccccgacaactacggcgacgagattgctattgagctgcggagtagcgtgggcgcc
ccggtggaggtgacccacaacttccaggtggactttgtgtggaagtcaacttcgtttgac
aggatgcagagtgcactgaagacgtttgcagtggacgagacttccgtgtctggctacatc
taccacaagctgttagggcatgaggtagaggatgtcatcatcaagtgccagctgcccaag
cgcttcacagcccagggtctccctgacctcaaccattcccaggtttatgccgtgaagact
gtgctgcagaggcctctgagcctgatccaggggcccccgggcaccggcaagactgtgacc
tcagccaccattgtctatcacctggcgcgacaaggcaacgggcccgtgctggtgtgcgcc
ccaagcaacattgccgtggaccagcttacggagaagatccaccagactgggctgaaggtg
gtacggctctgtgccaagagccgcgaggcgatagactcacccgtgtccttcctggcgctg
cacaaccagatcaggaacatggatagcatgccagagctgcagaagctgcagcagctcaag
gacgagactggggagctgtcgtcggccgatgaaaagcggtaccgggccctgaagcgcacc
gccgagagggagctgctcatgaatgcggatgtcatctgttgcacgtgtgtgggtgcgggt
gacccgcggctcgccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
accgagcccgagtgcatggtgcctgtggtccttggcgccaagcagctgatcctcgtgggc
gaccactgccaactgggccctgtagtgatgtgtaagaaggcagccaaggctggcttgtca
cagtcgctgttcgagcggctggtggtgctgggcatccggcccatccgcctgcaggtgcag
taccggatgcaccctgcgctcagtgccttcccctccaacatcttttacgagggctcgctg
cagaatggtgtgactgcagcggatcgtgtgaagaagggcttcgacttccagtggccccag
cctgacaaacccatgttcttctatgtgacccagggccaggaggagatcgccagctctggc
acctcctacctgaacaggacggaagctgccaacgtggagaaaatcacaacaaaactcttg
aaggcgggcgccaagccggaccagattggcatcatcacaccctatgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctctctacacaccaagctctaccaggaggtg
gagattgccagtgtggacgcattccaggggcgcgagaaggacttcatcatcctctcctgt
gtgcgggccaatgagcaccaggggattgggtttctcaacgacccccgacgcctcaatgtg
gccctaaccagggcgaggtacggggtcatcatcgtcggcaacccaaaggccctatccaag
cagccgctgtggaaccacctgctcaactactacaaggaacagaaggtgctggtggagggg
ccccttaacaacctgcgagagagcctcatgcagttcagcaagccgcgcaagctggtcaac
accatcaacccaggtgctcgcttcatgaccactgccatgtatgatgcccgcgaggctatc
atcccagggtcagtctatgaccgcagcagccagggccggccctcgagcatgtacttccag
acccacgaccagattggcatgatcagtgcaggccccagccacgtggccgccatgaacatc
cccatccccttcaacttggtcatgccaccaatgccaccacctggctactttgggcaggcc
aacggcccggccacaggtcggggcaccccaaaaggcaagactggccgtggggggcgccag
aagaaccgctttgggctctcagggcccagtcagacgacgctccccagtagccaggccagt
caggatgttgtctcgcagcccttctcacagggtgcgctgacgcagggctacgtctccatg
agccaaccctcgcagatgagccagccaggcctctcccagcctgagctgtcccaggacagt
taccttggggatgagttcaagtcccagattgatgtggcgctgtcgcaggactccacgtac
cagggagagcgggcctaccagcatggcggggtccctgggctgtcccagtattag
DBGET
integrated database retrieval system
