Trichechus manatus latirostris (Florida manatee): 101362020
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Entry
101362020 CDS
T05135
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101362020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tmu03041
]
101362020
03009 Ribosome biogenesis [BR:
tmu03009
]
101362020
Enzymes [BR:
tmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101362020
Spliceosome [BR:
tmu03041
]
Complex A
U2 snRNP components
U2 related factors
101362020
Complex B
101362020
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
101362020
Ribosome biogenesis [BR:
tmu03009
]
Eukaryotic type
90S particles
Helicases
101362020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Atrophin-1
AAA_29
Flavi_DEAD
AAA_25
Motif
Other DBs
NCBI-GeneID:
101362020
NCBI-ProteinID:
XP_004375193
UniProt:
A0A2Y9DIE5
LinkDB
All DBs
Position
Unknown
AA seq
795 aa
AA seq
DB search
MSKRHRLDLGEDYPSGKKRAGTDGKDRDRDRDREDRSKDRDRERDRGDREREREKEKEKE
LRASTNAMLISAGLPPLKASHSAHSTHSAHSTHSTHSAHSAHTGHAGHTSLPQCINPFTN
LPHTPRYYDILKKRLQLPVWEYKDRFTDILVRHQSFVLVGETGSGKTTQIPQWCVEYMRS
LPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTILKYMTDGM
LLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKF
QIYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDLLLFLTGQE
EIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRIFEPPPPKKQNGAIGRKVVVS
TNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGK
CFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRAL
ELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEVLSITAMLSVPQCF
VRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNV
RQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQ
LHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQL
DRIIAKLQSKEYSQY
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcggcatcggttggatctgggggaggattatccctccggcaagaagcgtgcg
gggaccgatgggaaggatcgagatcgtgaccgggatcgtgaagatcggtctaaagatcgg
gaccgagaacgtgatagaggagatagagaacgggagagggagaaagagaaggagaaggaa
ttgcgagcttcaactaatgccatgcttatcagtgctggattaccacctctgaaagcttcc
cattcagctcactcaacccactccgcacattcaacacattcaacacattctgctcattca
gcacatactggacacgcaggacacacatcacttccacagtgcattaatccattcaccaat
ttaccccatactcctcgatactatgatatcctaaagaaacgactccagctgcctgtttgg
gaatacaaggataggtttacagatatcctggttagacatcagtcctttgtactggttggt
gagactggttctggtaaaacaacacagattccacagtggtgtgtggagtatatgcggtca
ttaccaggacccaagagaggagttgcctgtacccagcccaggagagtggctgcaatgagt
gtggctcagagagttgctgatgaaatggatgtgatgttgggccaggaagttggttactcc
attcgatttgaagactgcagtagtgcaaaaaccattctcaagtatatgactgatgggatg
ttgcttcgtgaagctatgaatgatcccctcctggaacgttacggtgtgataattcttgat
gaggctcacgaaaggaccttggctacagatattctcatgggtgttctgaaggaagttgta
agacagagatcagatttaaaggttatagttatgagtgctactctagatgcaggaaaattc
cagatttactttgataactgtcctctcttaactattcctggacgtacacatcctgttgag
atcttttatactccagaacctgaaagggattatctcgaagcagcaattcgaacagtgatc
caaattcatatgtgtgaagaggaggaaggagatcttctacttttcttaactggtcaagag
gaaattgatgaagcctgtaagagaataaagcgggaggttgatgatttgggccctgaagtt
ggtgacattaaaatcattccattatactccacactcccacctcagcagcagcaaaggatt
tttgagccgccacctccaaaaaaacagaatggagcaattgggagaaaggtagttgtatcc
actaatattgcagagacttcactgacaatagatggtgtggtgtttgtgattgatcctgga
tttgcaaaacaaaaggtgtacaatcctcgaatccgagttgagtcccttttggtgacagct
attagtaaagcttcagcccaacaaagggctggtcgagctggtcgtacgaggcctggaaaa
tgcttcagactttacactgagaaagcttataaaacagaaatgcaggacaacacctatcct
gagattttgcgttctaatttaggatcagttgtgttacagttgaagaaacttggtattgac
gatttggtgcattttgattttatggatccaccagctcctgaaactctgatgagagccctg
gaacttttgaattatctggctgcgttaaatgatgatggagatctgactgaattgggatcc
atgatggcagagtttccactggatccacagctcgctaaaatggttattgcaagttgtgac
tacaactgttctaatgaggtcctatctattactgctatgttgtcagtcccacagtgtttt
gttcgtcccacggaggccaagaaagccgcagatgaggccaagatgaggtttgcccatata
gatggagatcatctgacactgctgaacgtctaccatgcttttaaacaaaatcatgaatcg
gttcagtggtgttacgacaacttcattaactacagatccctgatgtctgcagacaacgta
cgccagcagctatcacgaattatggacagatttaatttgcctcgtcgaagtactgacttt
acaagcagggactattatattaatatacgaaaagctttggttactgggtattttatgcag
gtggcacatttagaacgaacagggcattacctaactgtgaaagacaaccaggtggttcag
ttgcatccctctactgttcttgaccacaagcctgaatgggtgctttataatgagtttgtt
cttacaacaaagaattacatccggacgtgtacagatatcaagccagaatggttggtgaag
attgcccctcaatattatgacatgagcaatttcccacagtgtgaagcaaaaagacagttg
gaccgcatcattgccaaacttcagtccaaggaatattcacagtactga
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integrated database retrieval system
