Taurinivorans muris: JBF11_01020
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Entry
JBF11_01020 CDS
T09798
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmur
Taurinivorans muris
Pathway
tmur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JBF11_01020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmur03400
]
JBF11_01020 (mfd)
Enzymes [BR:
tmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JBF11_01020 (mfd)
DNA repair and recombination proteins [BR:
tmur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JBF11_01020 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UWX05939
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All DBs
Position
231321..234809
Genome browser
AA seq
1162 aa
AA seq
DB search
MSKSSEILRVLSENKEQSVHRSGFASIAKLMAQAVSENKYTVAVVKNRDELSTLKSFLSL
FIAELSVGKEKGALQEKNVPLFFETPFVSINPFNRRSLNREGWAERLAALYAMGQGHAKA
LIVTADMLIPFLPEKDFFNKHELFLKIHEDMAPELLMEQLVDWGYQRESMVSRAGDIARR
GDIVDIFPAGYDKPVRLDFFGDTIDEMRFFDPSTQRSVGKTEEICIIPVIAITQDEEART
IIHKHLANLFQQGKLSEFRQASVMRAVEQGDLRLLPGNIYARATNLEDWIPDDCQWFLPS
KADLKEYLAEAESGWKDALEEDRKDAGFDQADHLSFRNAGDSMSMLLKRRHCFVEPLRMG
IENHGIDLSEKTYFSFEELFQGKEVSERPWQQLLLGLRNYVKEKKQVVLTFSSERGRQKF
LKLIEQDGIYPHLRYDVKSKGIFALIASVHHAAELSWDDLLVIPEDLLQPKANQVKRQAS
QAFKGLDSYDELMNGDLLVHRDYGIGRFGGLHRMTVGGIENDYLLLEYADNAKLYMPVDR
LSIIQRFKSAEGISPVLDRLGGQAWTASKEKAKKAIEKIARDLVEMYAWRKVAKGFGYSP
LGELYREFEASFGFEETPDQAKAIQEVLADMEKPEPMDRLVCGDVGFGKTEVALRAAFRA
ACDGRQVAMLCPTTVLAEQHYQTFRSRLAGFPVNVGLLSRFVTKSKQTEVLNMAAKGQMD
VLIGTHRILSKDVELPNLGLLILDEEQRFGVRHKERLKQMKKNVDVLTLTATPIPRTLQL
SMSGIRELSVIETAPLERKPVATHLIDKDKNVLRQVLERELERGGQIFWVYNRVNGLEKI
VSYVRELVPHARVGMAHGQMGEKELENTMHMFWHGELDVLVCTSIIESGLDFPKANTLIV
DQAQLFGLGQLYQLRGRVGRSDRQAYAYFVVNDLHHLTEIAEERLRIILEMDYLGAGFQV
AMEDLRLRGAGNILGEAQSGHLARVGLDMYLEMLEEAVARAKGEGEALRSQDVEINLGLP
AYIPESYIEDGKERLKYYKMLSCAFESSRRNSIEMELRDRYGQLPSELLTFMEVLDFKYE
MKNIGVYKADIYADRVKVSFMDGQRKVEAETLIKFIQKYMESAKLHPHASLEIQLKDFVG
KEDGNAEIICKAKNLLLSLKEK
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagtcgtcagaaatattgcgggttttatctgaaaataaggaacaaagtgttcac
agaagcggatttgccagtattgcaaagcttatggcacaggcagtttctgaaaacaaatat
actgtcgccgttgttaaaaacagggatgaattgtcgacgctgaaatcgtttttatcctta
tttattgcggaattgtccgtcggtaaggaaaaaggggcgctgcaggaaaaaaatgttccg
ttgttttttgaaacgccgtttgtcagcatcaatccgtttaatcgtcgttcgttaaatcgt
gaaggctgggcggaacgcttggcggctctttatgccatggggcaggggcacgcgaaagct
ttgattgtcaccgccgatatgcttattccttttttgcccgaaaaagattttttcaataag
catgaattgtttttgaaaatccatgaagacatggcgcccgaacttttaatggaacagctt
gtcgattgggggtatcaacgtgaatccatggtttcccgtgcgggagatatcgcaaggcgc
ggggatatcgtggatatttttccggcaggttacgataagcctgtccgtcttgattttttt
ggggataccattgacgaaatgcgtttttttgatccctcaacccagcgttccgtcggcaaa
acggaagaaatttgcattattccggtaatagcgataacgcaggatgaggaagcgagaaca
atcatccataagcatcttgcgaatttgtttcagcaaggcaagctttcggaatttcggcaa
gcgagcgtcatgcgcgctgtggagcaaggggatttgcggcttttgccgggcaatatttat
gcccgcgcaacaaatcttgaagactggattcccgatgattgccaatggtttttaccaagc
aaagccgatttgaaagaatatcttgcagaagcggaaagcggttggaaagatgcgcttgaa
gaagacaggaaagacgcaggttttgaccaagccgaccatttgtcgtttcggaatgcgggc
gatagtatgtccatgcttttgaagcggcggcattgttttgtcgaacctctccgcatgggc
attgaaaatcatggcattgatctgtctgaaaaaacatatttcagttttgaagaactgttt
cagggaaaagaagtttccgaacggccatggcagcagctgctgcttggactgcgtaattat
gtgaaagaaaagaagcaggtcgtgctgacattttcttccgaacgggggcggcaaaagttt
ttaaaattgattgagcaggacggaatttatccgcatttgcgctatgatgtgaaaagcaaa
gggatttttgcgctcatcgcgtccgttcatcatgcggcggaactgagctgggacgatttg
ctcgttattccggaagatttgctgcagcctaaggcaaatcaggtgaaacgccaagcaagc
caagcatttaaagggcttgattcttacgatgagctcatgaacggcgatttgttggttcat
agggactacggaatagggcgtttcggcggtttgcaccgcatgactgtcggcggtattgaa
aatgactatttgttattggaatatgcggacaatgccaaactgtacatgccggttgaccgg
ctttccatcattcagcgttttaaatccgcagaaggcataagccccgttttagacagattg
ggcggtcaagcttggacggcaagcaaggaaaaagcgaaaaaagccattgaaaaaatcgcc
agggacttggtggaaatgtatgcatggcggaaggttgccaagggattcggttatagcccg
ttaggagaattgtaccgggaatttgaagcgagtttcggttttgaagaaacgccggaccaa
gcgaaagccattcaggaagttttggctgatatggagaagccggaaccgatggataggctc
gtttgcggcgatgtcggttttggaaagacggaggtcgctttgcgcgccgcgttcagggct
gcctgcgacggcaggcaggtggccatgctttgccctacgacggtgcttgccgaacagcat
taccagacattccgttcccgtttggcaggatttcctgtcaatgtgggattattgagccgt
tttgtgaccaaatcgaaacaaacggaagttttgaatatggcggcaaaagggcaaatggat
gttcttatcggcacacaccgcattttatcgaaagacgtggaacttcccaaccttggtctg
cttattttggatgaagagcagcgttttggcgtccggcacaaggaacggcttaaacaaatg
aaaaaaaatgtcgatgtgcttacgctcaccgcaacccccattccccgcactttgcagctt
tccatgtcgggcatacgcgaactgtcggtcattgaaacagctcctttggagcgtaaacct
gttgcgacgcatttgatagacaaggataagaacgttctgcggcaagttttggagcgtgaa
ctggaacgcgggggacagattttttgggtttataaccgtgtgaacggacttgagaaaatt
gtttcatacgtgcgggaacttgttccgcatgcccgtgtcggcatggctcacgggcaaatg
ggggaaaaagagcttgaaaacaccatgcatatgttttggcatggggaattggatgtgctt
gtttgtacgtcaattattgaatccgggcttgattttcccaaagcgaatacgcttattgtg
gaccaagcccagcttttcggcttggggcagttatatcagcttcgcgggcgtgtcggacgt
tccgacaggcaggcgtatgcgtattttgtggtcaacgatttacaccatttgactgaaatc
gcggaagagcgtttgcgtatcatcttggaaatggattaccttggagcgggttttcaagtc
gctatggaagatttgcgtttgagaggggctggcaatattcttggagaagcccagtcaggg
cacttggcgcgtgtagggcttgacatgtatttggaaatgttagaagaagcagttgcaagg
gcgaaaggagaaggggaagcgctaagaagccaagatgttgaaatcaatctcggtttgcct
gcttatattccggaatcgtatattgaagacggaaaagaacgcttgaaatattataaaatg
ctttcttgcgcttttgagagcagccgtcggaacagcatcgaaatggaacttcgcgacagg
tacgggcagcttccttccgaacttctgacttttatggaagttttggatttcaaatatgaa
atgaaaaacataggcgtgtataaagcggatatttatgccgatagggtgaaagtcagcttt
atggacggacaaagaaaggttgaggcggaaacattgattaaattcattcaaaaatatatg
gaaagtgcaaaacttcatcctcacgcaagccttgaaatccaattgaaagattttgtcggc
aaagaggatggcaatgccgaaatcatttgcaaagcaaaaaatctattgctttctttaaaa
gaaaaatag
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