Taurinivorans muris: JBF11_04875
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Entry
JBF11_04875 CDS
T09798
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tmur
Taurinivorans muris
Pathway
tmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBF11_04875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmur03019
]
JBF11_04875
03009 Ribosome biogenesis [BR:
tmur03009
]
JBF11_04875
Enzymes [BR:
tmur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JBF11_04875
Messenger RNA biogenesis [BR:
tmur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JBF11_04875
Ribosome biogenesis [BR:
tmur03009
]
Prokaryotic type
rRNA helicases
JBF11_04875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Acid_PPase
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
UWX06642
LinkDB
All DBs
Position
1033259..1034731
Genome browser
AA seq
490 aa
AA seq
DB search
MVCFTDREIRMIMNDMEEETQSLGYAPLKIEELSQNLQEACFSANWKTLMPVQAHSLPYT
LKGYDVMVQSQTGSGKTGAFLLPCLKNIDAEKNVCQALILVPTRELAQQVEHEAKILFRG
TLSCLCLYGGTKYSKQLQALQNGVQVVIGTPGRVLDHLLRRSLNLSQLKTLVFDEADRML
SVGFYQDMQEIKRFVPSQNVQVALFSATYPPDVLNISKSFLHEPKIISLSQGEVHVAKTS
HYFCECSPMDKDRCLTRILEKENPSQAIIFCNTKNNVHYIAGVLQGFGYNASEFSADLPQ
NKREQVLEKLRSGSLQYLVATDVASRGIDIPHLSHVFLYEVPEDREAYIHRAGRTGRAGA
AGTVISLVDIMEKLELERLAKSYKIDMLPYPDPSNEEIAQLVSERMANHLNKLRRGRTGL
ELERAKRFIPLLKDLAHDFDDIENIQLLTMLFDKEYQQSLSDKREEKPVIQNTKRKFYKR
NKKETTRTKG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggtatgcttcacggatagggaaatacgaatgattatgaacgatatggaagaagaaacg
caatctttaggatacgctccgctcaaaattgaagagctttcacaaaatttacaagaagct
tgcttcagtgcaaactggaaaaccctcatgcccgtccaagcgcatagccttccttatact
ttgaaaggctatgatgtcatggtgcagtcccaaaccggcagcggaaaaacaggagctttc
cttcttccgtgcctaaaaaacatcgatgcggaaaaaaatgtctgccaagcgctcattctt
gttccgacaagggaacttgcccagcaagtggaacatgaagcgaaaatccttttccgcggt
acgctttcctgcctttgcctttacgggggaacaaaatactcaaagcagctgcaagccctg
caaaacggcgtccaagtcgttatcggaactccgggtcgggtgcttgaccatttactgcgc
cgttccttaaatctttcccaactgaaaacgcttgttttcgatgaggcggaccgcatgctt
tccgtcggcttttatcaggacatgcaggaaatcaaacgtttcgttccgtcccaaaacgtg
caggtcgcgcttttttccgcaacctatcctcctgatgttctcaatatttccaaaagtttt
ctgcatgagcctaaaataatcagcctctcgcaaggcgaagtgcatgttgccaaaacctcg
cattatttctgcgaatgcagccccatggataaagacagatgcctcacccgcatccttgaa
aaagaaaatcccagccaagcgattattttctgcaacaccaagaacaatgtgcattacatt
gcgggagttttgcagggttttggctataacgcttcagaattttccgctgatttgccccaa
aacaagcgtgaacaagttttggaaaaattacgcagcggttcgctgcaatatttggttgcg
acggatgttgcgtcacgcggtatcgatattccccacctttcccatgtttttctatacgaa
gtcccggaagacagggaagcgtatatccacagggcaggacgcacgggacgggcgggagcc
gcaggcactgtcatttcccttgtggatattatggaaaagcttgaattggaacggcttgca
aaatcttataaaatagatatgctgccttatcccgacccgagtaatgaagaaatcgcccag
cttgtcagcgaaagaatggctaaccatctcaacaaactgcggcgcggcagaacaggattg
gaactggaaagggcgaaacgcttcatccccttactcaaagaccttgcgcatgattttgat
gatattgaaaacattcaacttttaaccatgctttttgacaaggaatatcagcaaagctta
tcggataaaagagaagaaaaaccagtaattcaaaatacgaaaagaaaattttataagaga
aataaaaaagaaacgacacgcaccaagggttga
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