Taurinivorans muris: JBF11_08640
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Entry
JBF11_08640 CDS
T09798
Name
(GenBank) RNB domain-containing ribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tmur
Taurinivorans muris
Pathway
tmur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JBF11_08640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmur03019
]
JBF11_08640
03016 Transfer RNA biogenesis [BR:
tmur03016
]
JBF11_08640
Enzymes [BR:
tmur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JBF11_08640
Messenger RNA biogenesis [BR:
tmur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JBF11_08640
Transfer RNA biogenesis [BR:
tmur03016
]
Prokaryotic type
tRNA degradation factors
JBF11_08640
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
AbiEi_4
Motif
Other DBs
NCBI-ProteinID:
UWX05500
UniProt:
A0ABY5Y0D7
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All DBs
Position
complement(1858591..1861251)
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AA seq
886 aa
AA seq
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MKKTSKKRKTYFGQDPEKEHSKNKKQSEFSSELIYSILEKTPHPLRLDDILRRAEVSRRS
KKEVLSLLHELVEKGKITRQRGGTYSVSASLSHLKGRLAVQRSGAAFVTVSKEEFPQIKE
DIYIPEHNLGDAWNGDIVEVILMPRPKANAHGIFNKRREGKVTRILERTHTALTVRLEED
ANKQQLKHIKHLAEHAYLAKPTDSRFNFTVLIPLTEKFLQEITAENNQILKNGDLLEVRI
ENRLPSSLDTPLWLAFPQKFLGGQNKVSVQESITKISNNIPTEFPDDVLNEAENIALAEG
FLKTEQERRTLRIPLEEGDTDLRDICLVTIDGEDSRDFDDAVFVEKTDQGYNLIVAIADV
SRYVTPYSKLDKEAKHRGNSYYFPHSVEPMLPETLSNGLCSLRPDEEHRVMFAKISFGVR
GQIKNTEFGQGVMKSKARLTYNAVQELYDAGRNNALVPAIAEEVGAMLFEAKELAEILIK
KRHKAGSLNLEIPEQQCVIENDTMIALEKRPHFFAHELIEAFMVSANEAVAEFLHKKKAA
CLYRVHPAPAPERMQNLSVIFGQTSLAEILPAETPDKIGESAWLSQILNSLSSIRKIAEK
NTNGHNAELENPKQNVTDDTDEHTHLASIAKNNYLAHRMILRAMMQARYSPFLDIHFGLA
SKCYCHFTSPIRRYADLMVHRSLKAELGLFDKNHSIFNPEYLENIADSCNEQERTAQTAE
REVFRRLSCLMLEKSIGKTFKAVISGLSNFGVFAEMRENMAEGMIRMEKLGDDYFVYDET
KQILYGERTGAEYRLGDEIDVQIEFVDITRLEIDLILMGVTPRKAKGRSTLFRNNKNENK
NRQAKKYKSEKYQSKKTKSQRATNEKNAKNSKQNPKEKHSKQKRKK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaacatcaaaaaagagaaagacatactttggacaagatccggaaaaggaacat
tcaaaaaacaaaaaacaatccgaattttcctccgaactcatttattccattctggaaaaa
actccccacccgcttaggcttgacgatattttacggcgcgcggaagtaagccgtcgctcc
aagaaagaagtcctttccctgctgcacgaacttgtggaaaagggaaaaattacccgtcaa
agaggcgggacatacagcgtcagcgccagcctcagccatttaaaggggcggttggcggtg
cagcgttccggagcggctttcgtcactgtcagcaaagaagaatttccacaaatcaaagaa
gatatttatattccggagcacaacctcggcgacgcatggaacggcgatattgttgaagtc
attcttatgccccgcccgaaagcgaacgcgcacggaattttcaataaaagacgcgaggga
aaagtcacccgaattttggaaaggacccatacggcactgacggtccgccttgaagaagac
gcgaataagcagcaattgaaacacatcaaacatcttgccgaacatgcgtatcttgcaaaa
ccgacggacagccgtttcaattttaccgtgctcattccccttacggaaaagtttttgcag
gaaatcacggcagagaacaatcaaatcctcaaaaacggcgacctgttggaagtccgcatt
gaaaaccgcttgccctccagtcttgatacgcccctttggcttgcttttccgcagaagttc
ctcggcggacaaaacaaagtttccgtacaggaaagcattaccaaaatcagcaacaatatc
cctacggaatttcctgacgacgttcttaacgaggcggaaaacatcgctcttgccgaaggc
tttttaaaaacggaacaagaacggcgaacactccgtattcctttggaagagggagatacg
gatttaagggatatttgtcttgtcaccattgacggagaagattcccgcgattttgacgac
gctgtttttgttgaaaaaacggaccaaggttataatcttattgtcgccattgccgatgtg
tcgcgctacgtcaccccctattccaagcttgacaaggaagccaaacaccgcggcaattct
tattattttcctcattctgtcgaaccgatgctcccggaaacgctttcaaacggactgtgc
agtttacgccccgacgaagaacacagggtcatgttcgcaaaaatcagctttggcgtccgc
gggcaaatcaaaaatacggaattcggacaaggcgtcatgaaatccaaggctcgccttaca
tacaatgccgtgcaggaattatacgacgccggaagaaataacgctttagtccccgccatt
gcggaggaagtcggcgccatgctgtttgaggcgaaggaactggctgaaattcttatcaaa
aaacgtcataaagcaggttcgctcaatttggaaattccggaacaacaatgcgttatcgaa
aatgataccatgatcgcccttgaaaagcgccctcattttttcgcccatgagcttattgaa
gcgttcatggtcagcgccaatgaagctgtcgccgaatttctgcacaagaaaaaggctgct
tgcctctaccgtgtccaccccgctcctgcgcctgaacgcatgcaaaatctttccgttatt
ttcggacaaacaagcttggcagaaatcctgcctgccgaaacacccgacaaaataggcgaa
agcgcatggctcagccaaattctgaacagtttgagctccataagaaaaattgcggaaaaa
aatacgaacggacataatgcggaacttgaaaatcccaaacaaaacgttacggacgatacc
gatgaacatacccaccttgcaagcattgcgaaaaataattatctcgcccaccgcatgatt
ttgcgggcaatgatgcaggcgcgttacagtccgtttttggacattcatttcgggctcgcc
tcaaaatgttactgccacttcacctcgcccatacgcaggtatgcggaccttatggtccat
aggagcctcaaagcggaactcggacttttcgacaaaaaccattccattttcaatccggaa
taccttgaaaatattgcggatagttgcaacgagcaggaacgcaccgcccaaacggctgaa
cgtgaggtattccgcaggctttcttgtttgatgctggaaaaatccatcggaaaaaccttt
aaagccgttatcagcggattgagcaatttcggcgtgtttgcagaaatgcgggaaaacatg
gctgaaggcatgatacgcatggaaaaactgggcgacgactattttgtttatgacgaaacc
aaacaaatcctttacggagaacgcacaggggccgaatacaggcttggcgacgaaatagac
gtgcaaatcgaatttgtggacatcacccgccttgaaattgatttaatccttatgggcgtg
actcctcgcaaagcaaaaggcagaagcacccttttccgcaacaataaaaatgaaaataaa
aatcggcaagcaaaaaagtataaatcagaaaaatatcaatcaaaaaaaacaaaatcacag
cgcgctacaaatgaaaaaaatgccaaaaactccaaacaaaacccaaaggaaaaacactcc
aagcaaaagcgcaaaaaataa
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