Thermotoga maritima Tma200: THMC_0590
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Entry
THMC_0590 CDS
T03901
Symbol
polC
Name
(GenBank) DNA polymerase III PolC
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
tmx
Thermotoga maritima Tma200
Pathway
tmx03030
DNA replication
tmx03430
Mismatch repair
tmx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THMC_0590 (polC)
03430 Mismatch repair
THMC_0590 (polC)
03440 Homologous recombination
THMC_0590 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmx03032
]
THMC_0590 (polC)
03400 DNA repair and recombination proteins [BR:
tmx03400
]
THMC_0590 (polC)
Enzymes [BR:
tmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THMC_0590 (polC)
DNA replication proteins [BR:
tmx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
THMC_0590 (polC)
DNA repair and recombination proteins [BR:
tmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
THMC_0590 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
tRNA_anti-codon
HHH_3
RNase_H_2
DUF655
DNA_pol_A_exo1
DEDDh_C
DNA_pol_B_exo1
Zn_ribbon_8
T2SSK
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AKE26498
LinkDB
All DBs
Position
605931..610034
Genome browser
AA seq
1367 aa
AA seq
DB search
MKKIENLKWKNVSFKSLEIDPDAGVVLVSVEKFSEEIEDLVRLLEKKTRFRVIVNGVQKS
NGDLRGKILSLLNGNVPYIKDVVFEGNRLILKVLGDFARDRIASKLRSTKKQLDELLPPG
TEIMLEVVEPPEDLLKKEVPQPEKREEPKGEELKIEDENHIFGQKPRKIVFTPSKIFEYN
KKTSVKGKIFKIEKIEGKRTVLLIYLTDGEDSLICKVFNDVEKVEGKVSVGDVIVATGDL
LLENGEPTLYVKGITKLPEAKRMDKSPVKRVELHAHTKFSDQDAITDVNEYVKRAKEWGF
PAIALTDHGNVQAIPYFYDAAKEAGIKPIFGIEAYLVSDVEPVIRNLSDDSTFGDATFVV
LDFETTGLDPQVDEIIEIGAVKIQGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENK
RSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKL
RSYSLDSVVEKLGLGPFRHHRALDDARVTAQVFLRFVEMMKKIGITKLSEMEKLKDTIDY
TALKPFHCTILVQNKKGLKNLYKLVSDSYIKYFYGVPRILKSELIENREGLLVGSACISG
ELGRAALEGASDSELEEIAKFYDYIEVMPLDVIAEDEEDLDRERLKEVYRKLYRIAKKLN
KFVVMTGDVHFLDPEDARGRAALLAPQGNRNFENQPALYLRTTEEMLEKAIEIFEDEEIA
REVVIENPNRIADMIEEVQPLEKKLHPPIIENADEIVRNLTMKRAYEIYGDPLPEIVQKR
VEKELNAIINHGYAVLYLIAQELVQKSMSDGYVVGSRGSVGSSLVANLLGITEVNPLPPH
YRCPECKYFEVVEDDRYGAGYDLPNKNCPRCGAPLRKDGHGIPFETFMGFEGDKVPDIDL
NFSGEYQERAHRFVEELFGKDHVYRAGTINTIAERSAVGYVRSYEEKTGKKLRKAEMERL
VSMITGVKRTTGQHPGGLMIIPKDKEVYDFTPIQYPANDRNAGVFTTHFAYETIHDDLVK
IDALGHDDPTFIKMLKDLTGIDPMTIPMDDPDTLAIFSSVKPLGVDPVELESDVGTYGIP
EFGTEFVRGMLVETRPKSFAELVRISGLSHGTDVWLNNARDWINLGYAKLSEVISCRDDI
MNFLIHKGMEPSLAFKIMENVRKGKGITEEMESEMRRLKVPEWFIESCKRIKYLFPKAHA
VAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRLRELKAMPAKDA
QKKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKLPGLGDSVAESI
IRAREEKPFTSVEDLMKRTKVNKNHIELMKSLGVLGDLPETEQFTLF
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagattgaaaatttgaagtggaaaaatgtctcgtttaaaagcctggaaatagat
cccgatgcaggtgtggttctcgtttccgtggaaaaattctccgaagagatagaagacctt
gtgcgtttactggagaagaagacgcggtttcgagtcatcgtgaacggtgttcaaaaaagt
aacggggatctaaggggaaagatactttcccttctcaacggtaatgtgccttacataaaa
gatgttgttttcgaaggaaacaggctgattctgaaagtgcttggagatttcgcgcgggac
aggatcgcctccaaactcagaagcacgaaaaaacagctcgatgaactgctgcctcccgga
acagagatcatgctggaggttgtggagcctccggaagatcttttgaaaaaggaagtacca
caaccagaaaagagagaagaaccaaagggtgaagaattgaagatcgaggatgaaaaccac
atctttggacagaaacccagaaagatcgtcttcaccccctcaaaaatctttgagtacaac
aaaaagacatcggtgaagggcaagatcttcaaaatagagaagatcgaggggaaaagaacg
gtccttctgatttacctgacagacggagaagattctctgatctgcaaagtcttcaacgac
gttgaaaaggtcgaagggaaagtatcggtgggagacgtgatcgttgccacaggagacctc
cttctcgaaaacggggagcccaccctttacgtgaagggaatcacaaaacttcccgaagcg
aaaaggatggacaaatctccggttaagagggtggagctccacgcccataccaagttcagc
gatcaggacgcaataacagatgtgaacgaatatgtgaaacgagccaaggaatggggcttt
cccgcgatagccctcacggatcatgggaacgttcaggccataccttacttctacgacgcg
gcgaaagaagctggaataaagcccattttcggtatcgaagcgtatctggtgagtgacgtg
gagcccgtcataaggaatctctccgacgattcgacgtttggagatgccacgttcgtcgtc
ctcgacttcgagacgacgggtctcgacccgcaggtggatgagatcatcgagataggagcg
gtgaagatacagggtggccagatagtggacgagtaccacactctcataaagccttccagg
gagatctcaagaaaaagttcggagatcaccggaatcactcaagagatgctggaaaacaag
agaagcatcgaggaagttctgccggagttcctcggttttctggaagattccatcatcgta
gcacacaacgccaacttcgactacagatttctgaggctgtggatcaaaaaagtgatggga
ttggactgggaaagaccctacatagatacgctcgccctcgcaaagtcccttctcaaactg
agaagctactctctggattccgttgtggaaaagctcggattgggtcccttccggcaccac
agggccctggatgacgcgagggtcaccgctcaggttttcctcaggttcgttgagatgatg
aagaagatcggtatcacgaagctttcagaaatggagaagttgaaggatacgatagactac
accgcgttgaaacccttccactgcacgatcctcgttcagaacaaaaagggattgaaaaac
ctatacaaactggtttctgattcctatataaagtacttctacggtgttccgaggatcctc
aaaagtgagctcatcgagaacagagaaggactgctcgtgggtagcgcgtgtatctccggt
gagctcggacgtgccgccctcgaaggagcgagtgattcagaactcgaagagatcgcgaag
ttctacgactacatagaagtcatgccgctcgacgttatagccgaagatgaagaagaccta
gacagagaaagactgaaagaagtgtaccgaaaactctacagaatagcgaaaaaattgaac
aagttcgtcgtcatgaccggtgatgttcatttcctcgatcccgaagatgccaggggcaga
gctgcacttctggcacctcagggaaacagaaacttcgagaatcagcccgcactctacctc
agaacgaccgaagaaatgctcgagaaggcgatagagatattcgaagatgaagagatcgcg
agggaagtcgtgatagagaatcccaacagaatagccgatatgatcgaggaagtgcagccg
ctcgagaaaaaacttcacccgccgatcatagagaacgccgatgaaatagtgagaaacctc
accatgaagcgggcgtacgagatctacggtgatccgcttcccgaaatcgtccagaagcgt
gtggaaaaggaactgaacgccatcataaatcatggatacgccgttctctatctcatcgct
caggagctcgttcagaaatctatgagcgatggttacgtggttggatccagaggatccgtc
gggtcttcactcgtggccaatctcctcggaataacagaggtgaatcccctaccaccacat
tacaggtgtccagagtgcaaatactttgaagttgtcgaagacgacagatacggagcgggt
tacgaccttcccaacaagaactgtccaagatgtggggctcctctcagaaaagacggccac
ggcataccgtttgaaacgttcatggggttcgagggtgacaaggtccccgacatagatctc
aacttctcaggagagtatcaggaacgtgctcatcgttttgtggaagaactcttcggtaaa
gaccacgtctatagggcgggaaccataaacaccatcgcggaaagaagtgcggtgggttac
gtgagaagctacgaagagaaaaccggaaagaagctcagaaaggcggaaatggaaagactc
gtttccatgatcacgggagtgaagagaacgacgggtcagcacccaggggggctcatgatc
ataccgaaagacaaagaagtctacgatttcactcccatacagtatccagccaacgataga
aacgcaggtgtgttcaccacgcacttcgcatacgagacgatccatgatgacctggtgaag
atagatgcgctcggccacgatgatcccactttcatcaagatgctcaaggacctcaccgga
atcgatcccatgacgattcccatggatgaccccgatacgctcgccatattcagttctgtg
aagcctcttggtgtggatcccgttgagctggaaagcgatgtgggaacgtacggaattccg
gagttcggaaccgagtttgtgaggggaatgctcgttgaaacgagaccaaagagtttcgcc
gagcttgtgagaatctcaggactgtcacacggtacggacgtctggttgaacaacgcacgt
gattggataaacctcggctacgccaagctctccgaggttatctcgtgtagggacgacatc
atgaacttcctcatacacaaaggaatggaaccgtcacttgccttcaagatcatggaaaac
gtcaggaagggaaagggtatcacagaagagatggagagcgagatgagaaggctgaaggtt
ccagaatggttcatcgaatcctgtaaaaggatcaaatatctcttcccgaaagctcacgct
gtggcttacgtgagtatggccttcagaattgcttacttcaaggttcactatcctcttcag
ttttacgcggcgtacttcacgataaaaggtgatcagttcgatccggttctcgtactcagg
ggaaaagaagccataaagaggcgcttgagagaactcaaagcgatgcctgccaaagacgcc
cagaagaaaaacgaagtgagtgttctggaggttgccctggaaatgatactgagaggtttt
tccttcctaccgcccgacatcttcaaatccgacgcgaagaaatttctgatagaaggaaac
tcgctgagaattccgttcaacaaacttccaggactgggtgacagcgttgccgagtcgata
atcagagccagggaagaaaagccgttcacttcggtggaagatctcatgaagaggaccaag
gtcaacaaaaatcacatagagctgatgaaaagcctgggtgttctcggggaccttccagag
acggaacagttcacgcttttctaa
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