Terrisporobacter mayombei: TEMA_08160
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Entry
TEMA_08160 CDS
T09390
Symbol
dbpA_1
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tmy
Terrisporobacter mayombei
Pathway
tmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TEMA_08160 (dbpA_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmy03019
]
TEMA_08160 (dbpA_1)
03400 DNA repair and recombination proteins [BR:
tmy03400
]
TEMA_08160 (dbpA_1)
Enzymes [BR:
tmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TEMA_08160 (dbpA_1)
Messenger RNA biogenesis [BR:
tmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TEMA_08160 (dbpA_1)
DNA repair and recombination proteins [BR:
tmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TEMA_08160 (dbpA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
RQC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
Helicase_Sgs1
HHH
Motif
Other DBs
NCBI-ProteinID:
WMT80499
LinkDB
All DBs
Position
738572..741049
Genome browser
AA seq
825 aa
AA seq
DB search
MYKKPIEILEKYFGYKEFRKGQEEIINSILNKKDVVAIMPTGGGKSLCYQIPALILDGIT
IVISPLISLMKDQVDTLNSMNIKSSYINSSLSDNEIKNILNGVYNEEYKIIYVAPERLDN
YDFINVIKRTNISQIAVDEAHCISQWGHDFRKSYTKISHFICDLEERPIVTSFTATASTK
VKEDIIKNLRLQDYKEYITGFNRDNLEIDIVKNCNKKEYILNYIEKNKDNSGIVYAATRK
SVEAIYESLKKRNYSVVKYHGGLNNEERQRYQELFVKDEKNIMIATNAFGMGIDKSNIRW
ILHYNMPQSIENYYQEIGRAGRDGEKSRCTLLFSPQDIQTQKLLIDSGISNMERKQSQYT
KLQQIIDLVYSNDCYRKNILNYFGEEFENKCDNCSNCLNRGIMVDKSEDAMKVISCIIRM
KRSYGINMIVDVLRGSKNKKVINLGFNSLSTYGIMKNYKSEDLKIFINTLISHGYLDMVE
SVSNNNSFATIRINNMSKEVIKENKKVMLYEISSQEDEKDVNHLYDKLKEIRFIVAKTNN
IAPYMVFSDSTLMEMSKKYPTNKLEMLEISGVGEVKFDKYGEKFIEEIIKYTSENNIKIS
DISEENNNLKQYDEFLYVNSNKELYDRLKELRAFYAQKENTIFYKILSKNTLKEISGRYP
VSEKELLDISGIGPVKFNKYGEDIVKIVKEYLEEKNINPVWQEKKKLNIVIDGDNRKNNE
IALDLLNQGKELNDVSLEVEVSPATLLTYVNDYIIDGNALNFDLELSEYYNESEKNKILK
AMDECKSQNLNLIKKILPSNIKYESIMAVIIENNLNLSNKKKELC
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtataaaaaacctatagaaatattggaaaagtattttggatacaaagaatttagaaaa
ggtcaagaagagataattaattctatactgaataaaaaagatgtggtagccataatgcct
acaggtggtggaaagtcattatgttaccaaattccagccctgatattagatggcattacc
atagttatatcaccactaatatcattaatgaaagatcaagtagacactttaaattcaatg
aatattaaatcatcatatataaatagttctttatcagacaatgaaataaaaaatatacta
aatggtgtatataatgaggaatataagattatatatgttgccccagaaagattagataat
tatgactttattaatgttattaaaagaacgaatataagtcaaattgctgtagatgaggct
cactgtatttcacagtggggtcatgattttagaaaaagttatactaaaatatcacatttt
atttgtgatttagaagaaagacctatagttacttcttttactgcaactgcatctactaaa
gtaaaagaagatataataaagaatttaaggttacaagactataaggaatatattacagga
tttaatagagataatttggagattgatatagttaaaaactgtaataagaaagaatatata
ctaaactatattgaaaagaataaagataatagtggaatagtatatgctgctacgagaaaa
tctgttgaagcaatatatgaaagcctaaagaaaagaaattattctgttgtaaaataccat
ggtggactaaataatgaagagaggcagcgctatcaagagttatttgtaaaggatgaaaag
aatataatgatagcaacaaatgcctttggaatgggtatagataaaagtaatataaggtgg
attcttcattataacatgccccaaagtatagaaaactattatcaagaaataggtagagct
ggaagagatggagaaaaaagtaggtgtactttattgttttcaccacaagatattcagacg
caaaaattacttattgattcaggtatatccaatatggaaagaaaacaaagtcagtatact
aaattacagcagataatagatttagtttatagcaatgattgttatagaaaaaatatctta
aattactttggagaagagtttgaaaataaatgtgacaactgtagtaattgtttaaataga
ggcattatggttgataagagtgaagatgccatgaaggtaatatcatgtattatcagaatg
aaaagaagctatggaataaatatgattgtggatgtacttagaggatctaagaataagaag
gtaattaatttaggttttaatagtttatctacatatggtattatgaaaaactataaaagt
gaagatttaaaaatatttattaatactttaatatcccatggttacttagatatggtagaa
agtgtttcaaataataattcttttgcaactataagaattaacaacatgtcaaaagaagta
attaaggaaaataaaaaagtaatgctatatgaaatttcttcacaagaagatgaaaaagat
gttaaccatctatatgataaactgaaagagataagatttattgtagctaagacaaataat
attgcaccatatatggtattttctgattccactcttatggagatgagtaagaagtatcct
acaaataaactagaaatgctagaaatatctggtgttggagaagttaaatttgataaatat
ggtgagaaatttattgaagaaataataaaatatacaagtgaaaataatataaaaataagt
gacataagtgaagaaaataataatttaaaacaatacgatgaatttttatatgtaaatagt
aataaagaactttatgacagacttaaagaacttagagctttttatgctcaaaaagaaaat
accattttctataaaatattatctaaaaatacattaaaagagattagtggaagatatcca
gtaagtgagaaggaattattagatattagtggtataggtccagtgaaatttaataaatat
ggtgaagatattgtcaagatagtaaaggaatacttagaagaaaaaaatattaatcctgtt
tggcaagaaaaaaagaagcttaatatagttatagatggagataaccgtaaaaataacgaa
atagctttagatttacttaatcaaggtaaagaattgaatgatgtaagtttagaagtagaa
gtatctccagcaactttactaacttatgttaatgactatattatagacggaaatgcttta
aattttgatttagaattaagtgaatattataatgaaagtgaaaagaataaaatcttaaaa
gctatggatgagtgtaaaagtcaaaacttaaatttaatcaaaaaaatacttccatctaat
ataaaatatgaaagtattatggcggtaataattgaaaataatttgaatttgtcaaataaa
aagaaggaattatgttag
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