Terrisporobacter mayombei: TEMA_31660
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Entry
TEMA_31660 CDS
T09390
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmy
Terrisporobacter mayombei
Pathway
tmy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TEMA_31660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmy03400
]
TEMA_31660 (mfd)
Enzymes [BR:
tmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TEMA_31660 (mfd)
DNA repair and recombination proteins [BR:
tmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TEMA_31660 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
Peroxin-22
UB2H
RecG_dom3_C
AAA_22
MFD_D3
UBR1-like_wing
Motif
Other DBs
NCBI-ProteinID:
WMT82677
LinkDB
All DBs
Position
3047200..3050592
Genome browser
AA seq
1130 aa
AA seq
DB search
MKDVLLYPLQNLNEYKEIISYIEKSDGAALVNGLLPMQKPHIVYSIFKELKKQILFIANS
DLEAKKVYEDLEGYIKGKVEYLSSQDIYFYHLDAKDRSEEAKKLKTLLKLAKGEKVITVT
SAEVILRKYIPKKVLIDNIITYKVGDIVDIEKLTNTLVNLGYERVSKIEGFGQFSIRGGI
IDIFSLEYTNPIRMELFDDEVDSIRTFDVFSQMSIEKIKKVVITPSREFIYPEELDKIVK
NLKKEVNDSTDEDAISNIDKISNRTYFEGIENYIDYVYPQDNKSIFTYLNEDAVIFTQDI
TRLKEKCENCFNEFKENYKLNLERGLALKNQGKLIYTYNDLSYLIENRSILLNTLLTRQI
NEFNIKRIINFDSREIPPYNGKLELLAEDLNRLKYNGNKVVLVTSTLERAKKLSKDLIEF
NVEAIVSKSRDVEIKSSQIIICPGNIRRGFEYKSIKFIVITDNEIIGVQKRTSAKKKKNK
NKNGKKIDSFLDLNIGDYVVHENSGIGRYTGIEQVLVNGIKKDYIKIIYQGGDNLYVPID
QMDKVQKYIGADVERVKLNKLGTSEWTRAKAKVKREIEDMTKDLIELYAKREKVKGFKFS
KDTLWQKEFEDLFPHEETEDQLKAIKETKKDMESSKVMDRLVCGDVGYGKTEVAIRAIFK
ACMDNKQVAVLVPTTILAQQHYNTFKERFENYPIRVEVLSRFKTPKQQKQIIEDAKKGLV
DILIGTHRIVSKDINLPKLGLVVIDEEQRFGVKHKESLKKIKNTVDVLTLSATPIPRTLH
MSLSGIRDMSVIEDPPQERHPVITYVTEAKESIIQDEVEREVARGGQVFFVYNRVEGIER
IAAKVQELVPDARVSVAHGRMTPKVLENIIIDFLNKEYDVLVCTTIVETGMDISNANTMI
IYDADKMGLAQLYQLRGRVGRSSRQGYAYLMYEKDKVLSEVAEKRLKAIKEFTEFGSGFK
IAMRDLEIRGAGNILGSQQHGHMAVIGYDLYVKMLNDAIRKVKGELIVEEVEVEIDLSVN
AYIPDYYIDDELIKLEMYKKIACIENKDDLAEVQYELEDRFSDIPKPVETLLNIAYIKSV
CKKLKIEKVRQVKDEIILSPLTRYKTKETIGYKIVKELEELLEKMLKLNN
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatgtattattatatcctttgcagaatttaaatgaatataaggaaattataagc
tatattgagaaaagtgatggcgcagccttagttaatggtttattacctatgcaaaagcca
catatagtttattccatatttaaagaattaaaaaaacaaatcctttttattgccaatagt
gatttagaagcaaaaaaagtttatgaggatttagaaggctatattaaaggaaaggtagaa
tatttatcaagtcaagatatttacttttatcatttagatgcaaaggacagaagcgaagaa
gcaaaaaaattaaaaacattacttaaattggctaaaggagaaaaggttattacggtgact
tctgctgaagttattttgaggaaatatataccaaaaaaggtattgatagacaatataatt
acttataaagttggagatattgttgatatagaaaaattaactaacacccttgtcaattta
ggatatgaaagagtttctaaaattgaggggtttggtcaatttagtataagaggtggaata
atagatattttttctttagagtacactaaccctattcgtatggaattatttgacgatgaa
gtagattctatacgaacttttgatgtgttttcacaaatgtctatagaaaaaataaaaaaa
gttgtaataacgccatcaagggagtttatatatcctgaagaattggataaaatagtaaaa
aatcttaaaaaagaagttaatgatagtacagatgaagatgctatttccaatattgataaa
atatcaaatagaacttattttgaagggatagaaaattacattgactatgtttatcctcaa
gacaacaaaagtatttttacttatttaaatgaagatgcagtaatttttacacaagatatt
acaagacttaaggaaaagtgtgaaaactgctttaatgagtttaaagaaaattacaaatta
aacctagaaagaggactggctctgaagaatcaaggtaagctaatttatacttataatgat
ttaagttatcttatagaaaacagatccattcttctaaatacattattaacaagacagata
aatgagtttaacataaagagaattattaattttgattctagggaaatacctccttataat
ggtaaattggaacttttagcagaagacttaaacagattaaaatataatggaaataaagtt
gtattagttacaagcaccttagaaagagcaaagaagttaagtaaggacttgattgagttc
aatgtggaagccatagtgtctaaaagtagagatgttgaaatcaaatcttcccaaataatt
atttgcccgggaaatatacgtagaggttttgaatataaatcaattaaatttatagtaatt
actgataatgaaataataggagttcaaaaaagaacttcagcaaaaaagaaaaaaaataaa
aataaaaatgggaaaaagattgactctttcttagatttgaatataggagactatgttgtt
catgaaaatagtggtataggtagatacactggaatagaacaagttttagtaaatggaatt
aaaaaagactatataaaaataatttaccaaggtggagataatctttatgtacctattgat
caaatggataaggtacaaaaatatattggtgcggatgttgaaagagttaaattaaataaa
ttaggaactagtgagtggactagggcaaaagctaaggttaaaagagaaatagaagatatg
actaaagaccttattgagctttatgcaaaaagagaaaaagttaaaggattcaaattctca
aaagatactctttggcaaaaagaattcgaagatttattccctcacgaagaaacagaagat
caattaaaagctataaaagaaactaaaaaagatatggaatcttcaaaagtaatggataga
ttagtttgtggagatgttggatatggcaagacggaagtagcgattagagctatttttaag
gcttgtatggataataagcaagttgcagtactagttcctactactatacttgctcagcag
cattacaatactttcaaagaaaggtttgaaaattatccaatcagagtagaagttttaagt
aggtttaaaacaccaaaacaacaaaaacaaattatagaagatgctaaaaaaggtttggtt
gatatattaataggaactcacagaattgtttcaaaagatataaatctacctaaactagga
ttagtagttatagacgaagagcaaagatttggcgttaagcataaagaatctttaaagaaa
ataaaaaatactgtagacgtattgactttatcggcaacgcctataccaagaactcttcac
atgtcgcttagtggaattagagacatgagtgttatagaagatccgccgcaagagagacat
ccagttataacttatgttacagaggctaaggaaagtataatacaagatgaggtggaaaga
gaagtagctagaggtgggcaagtattctttgtatataacagagttgaaggaattgaaaga
atagctgcaaaagtacaagaattggttccggatgctagagtttctgtagcacatggtaga
atgactccaaaagtcctagaaaacattataattgatttcttaaataaggaatatgatgtt
ttagtttgtacaacaatagttgaaactggtatggatatctccaacgctaatacaatgata
atttatgatgcagataaaatgggtctagcgcagttatatcagttacgtggtagggttgga
agaagttctagacaaggttatgcttatttaatgtatgaaaaagataaagtcttaagtgaa
gtagcggaaaaaaggttaaaagctattaaagagtttacagagtttggctcagggtttaaa
atagctatgagagacttggaaattagaggagcaggaaatatattaggttctcaacaacat
ggtcatatggcagttataggatacgacttatatgttaaaatgttaaacgatgccataaga
aaagttaagggagaacttatagttgaagaagtagaagttgaaattgatttaagtgttaat
gcatatattccagattattatattgatgatgaattaataaagttagaaatgtataagaaa
attgcatgtatagaaaataaagatgatttagcagaagttcaatatgaactggaagataga
ttttcagatattcctaaacctgtggaaacattattaaacattgcttatataaaatctgtg
tgcaaaaaacttaaaatagaaaaggtaagacaagttaaagatgaaataattttaagtcct
ttaactagatacaaaactaaagaaacaatagggtataagatagttaaggaactagaagaa
ctattagaaaaaatgttaaaattaaataattaa
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