Thauera aminoaromatica: Tmz1t_1711
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Entry
Tmz1t_1711 CDS
T00804
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tmz
Thauera aminoaromatica
Brite
KEGG Orthology (KO) [BR:
tmz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmz03016
]
Tmz1t_1711
Enzymes [BR:
tmz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Tmz1t_1711
Transfer RNA biogenesis [BR:
tmz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Tmz1t_1711
Prokaryotic type
tRNA splicing ligases
Tmz1t_1711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DNA_ligase_IV
Motif
Other DBs
NCBI-ProteinID:
ACK54466
UniProt:
C4ZKE9
LinkDB
All DBs
Position
1925725..1926921
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AA seq
398 aa
AA seq
DB search
MPVKTVLNGSTVPVRIWTDDIDEGSKAQLANLASLPFIHHHVAAMPDVHLGIGATIGSVI
ATHQAIIPAAVGVDIGCGMVAARLSLTANDIDEKRLKKVFDQITRDVPVGRDQHADGRVL
VDAVRPFEPGLKALTDRHPQLLKAFGRFSKWANQMGTLGGGNHFIEVCLDEKRRVWVMLH
SGSRGIGNAIATYFIELARKDMERHMIHLPDRDLAYFREGSPHFDDYVEAVHWAQDYAMA
NRQAMLELVLAGLARHLPPFTVTTEAVNCHHNYVAREHHFGADVWVTRKGAIRAGEGELG
IVPGSMGARSYIVRGRGNAESFCSSAHGAGRRMSRTAATKHFTEADLARQTEGVICRKDK
GVVDEIPGAYKDIDTVMANQSDLTEVLHTLKQVVCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaagaccgtcctgaacggcagcaccgtgccggtcaggatctggaccgacgac
atcgacgagggctcgaaggcgcagctcgccaacctcgccagcctgcccttcatccaccac
cacgtcgccgccatgcccgacgtgcatctgggcatcggcgcgaccatcggctcggtgatc
gccacccaccaggcgatcatcccggcggcggtgggcgtcgacatcggctgtggcatggtc
gcggcgcgcctgtcgctcacggcgaatgacatcgacgagaagcggctgaagaaggtgttc
gatcagatcacgcgcgacgtgcccgtcggccgtgaccagcatgccgacggtcgcgtgctc
gtcgatgcggtgcgccccttcgagcccggcctcaaggccctgaccgatcgtcacccgcag
ctgctcaaggcctttggcaggttctccaagtgggccaaccagatgggcacgctcggcggt
ggcaaccacttcatcgaggtctgcctggatgagaagcgccgggtgtgggtgatgctgcac
tcgggcagccggggcatcggcaacgcgatcgcgacctacttcatcgagctcgccaggaag
gacatggaacggcacatgatccacttgcccgaccgcgacctggcctacttccgcgagggc
agcccgcatttcgacgactacgtcgaggcggtgcactgggcgcaggactatgcgatggcc
aaccgccaggcgatgctcgagctcgtgctcgcagggctggcgcgccacctgccgcccttt
accgtgactaccgaggcggtgaactgccaccacaactacgtcgcccgcgagcaccacttc
ggcgccgacgtgtgggtgaccagaaagggcgcgatccgcgcgggggagggcgagctcggc
atcgtccccggcagcatgggcgcgcgcagctacatcgtgcgcggcagggggaacgcggag
agcttctgttccagtgcgcacggcgctggccggcgtatgagccgcacggcggccaccaag
cacttcaccgaggccgaccttgcgcgccagaccgagggcgtgatctgccgcaaggacaag
ggcgtggtggacgagatccccggcgcgtacaaggacatcgacaccgtgatggccaaccag
tcggacctgaccgaggtgctgcacacgctgaagcaggtggtgtgcgtgaaagggtag
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