Thauera aminoaromatica: Tmz1t_1969
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Entry
Tmz1t_1969 CDS
T00804
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tmz
Thauera aminoaromatica
Pathway
tmz03410
Base excision repair
tmz03430
Mismatch repair
tmz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tmz1t_1969
03430 Mismatch repair
Tmz1t_1969
03440 Homologous recombination
Tmz1t_1969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmz03400
]
Tmz1t_1969
DNA repair and recombination proteins [BR:
tmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Tmz1t_1969
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Tmz1t_1969
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Tmz1t_1969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
ACK54720
UniProt:
C4ZNW2
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All DBs
Position
complement(2219477..2221168)
Genome browser
AA seq
563 aa
AA seq
DB search
MTRIQPRSIPQQAFARLADAGLHPLLARLYAARGIARADELDTSLKNLLPPEALTGTAEA
AILLADAIEAGARMVIVADYDCDGATACAVGVRALRAFGADVHYLVPDRVTLGYGLTPAM
VEIAARLEPDVLITVDNGIASVEGIAAARAHGMATVITDHHLPGDVLPEADVIVNPNQPG
CDFPSKALAGVGAMFYTMLALRAELRERGAFAGAKEPNLAELLDLVALGTVADVVKLDRN
NRILVAQGLARMRAGRLQPGIRALFGLAGRDPARASTMDLGFMIGPRLNAAGRLSDMSLG
IECLITDDPGRAMNIAQELDKLNRERRSIEAGMQEEALARLAGFDAGNRATVALFEPDWH
QGVIGIVAGRIKERLHRPTIAFARASDGELKGSGRSIPGLHLRDALDLVTKRQPDLIVRF
GGHAMAAGLTIRESELARFDAAFEEVVGELLEPAQLERRIDTDGSLESGYFALDAARMLD
NEIWGQGFPAPLFDDVFRVERQRLLKDKHLKLELARGSTRYEAIRFNHAEGAAGQIHAAF
RLGINEYNGVASVQLMLEHFEAA
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaatccagccccgctccatcccgcagcaagccttcgcccgcctcgccgacgcc
ggcctgcatccgctgctcgcccgcctctacgccgcgcgcggcatcgcgcgcgccgacgag
ctcgacaccagcctgaagaacctgctgccgcccgaggcgctcaccggcacggcggaagcc
gcgatcctgctcgccgacgccatcgaggccggcgcgcgcatggtcatcgtcgccgactac
gactgcgacggcgccaccgcctgcgcggtgggcgtgcgcgcgctgcgcgccttcggtgcc
gacgtgcattacctcgtgccggaccgcgtcacgctcggctacggcctcaccccggccatg
gtcgagatcgccgcgcgcctcgagcccgacgtgctgatcaccgtcgacaatggcatcgcc
agcgtcgagggcatcgccgccgcgcgcgcccatggcatggccacggtgatcaccgaccat
cacctgcccggcgacgtgctgcccgaagccgacgtgatcgtgaaccccaaccagcccggc
tgcgacttcccgagcaaggcgctggccggcgtgggcgcgatgttctacacgatgctcgcg
ctgcgcgccgaactgcgcgagcgcggcgccttcgccggcgccaaggaacccaaccttgcc
gagctgctcgacctcgtcgcgctcggcaccgtggccgacgtggtcaagctcgaccgcaac
aaccgcatcctggtcgcgcaaggcctcgcgcgcatgcgcgccgggcgcctgcagcccggc
atccgcgcgctgttcgggctcgccgggcgcgacccggcgcgcgccagcacgatggacctc
ggcttcatgatcggccctcgcctcaacgcggccgggcgactctccgacatgagcctgggc
atcgagtgcctgatcaccgacgaccccggccgggcgatgaacatcgcccaggagctcgac
aagctcaaccgcgaacgccgcagcatcgaggccggcatgcaggaagaagcgctcgcccgc
ctggcgggtttcgacgccggcaaccgcgccaccgtggcgctcttcgaacccgactggcac
caaggtgtgatcggcatcgtcgccggccgcatcaaggagcggctgcaccgccccaccatc
gccttcgcgcgcgcgagcgacggcgaactcaagggctccgggcgctcgatccccggcctg
cacctgcgcgacgcgctcgacctcgtcaccaagcgccagcccgacctcatcgtgcgcttc
ggcggccacgccatggcggccggcctgaccatccgcgaatcggaactcgcacgcttcgac
gcggccttcgaggaggtcgtcggcgaactgctcgagcccgcccagctcgagcgccgcatc
gataccgacggcagcctggaatcgggctacttcgcgctcgacgccgcgcgcatgctcgac
aacgagatctggggccagggcttcccggcgccgctgttcgacgacgtcttccgcgtcgag
cgccagcgcctgttgaaggacaagcacctcaagctcgagctcgcgcgcggcagcacgcgc
tacgaggccatccgcttcaaccacgccgagggcgccgccggccagatccacgccgccttc
cgcctcggcatcaatgaatacaacggcgtcgccagcgtgcagctgatgctcgaacatttc
gaggcggcgtag
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