Thauera aminoaromatica: Tmz1t_2436
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Entry
Tmz1t_2436 CDS
T00804
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tmz
Thauera aminoaromatica
Pathway
tmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tmz1t_2436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmz03019
]
Tmz1t_2436
03009 Ribosome biogenesis [BR:
tmz03009
]
Tmz1t_2436
Enzymes [BR:
tmz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tmz1t_2436
Messenger RNA biogenesis [BR:
tmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tmz1t_2436
Ribosome biogenesis [BR:
tmz03009
]
Prokaryotic type
rRNA processing factors
Tmz1t_2436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ACR01039
UniProt:
C4K9G3
LinkDB
All DBs
Position
2623678..2626863
Genome browser
AA seq
1061 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDY
GADRHGFLPFKEISRSYFQPGADAKASIKEALKEGQELIVQVEKDERGNKGAALTTYISL
AGRYLVLMPNNPRGGGVSRRVEGDERAELRENMDQLDVPQGMSLIARTAAIGRSAEELQW
DLNYLLQLWTAIEGAAQGQSGAFLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFEQATQ
FMAHVMPGNVARVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSID
VNSGRATKGSDIEETAFRTNCEAADEIARQLRLRDLGGLIVIDFIDMESAKNQREVENRL
RDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCNGTGHIRSTESSALHI
VRILEEEAMKDNTGAVHLQVPVDVATFLLNEKRVDIARIEMRHKVQLIIVPNRHLETPAH
EIIRLRHDQLNTEDIALASYQMVQKPVEEDTRLPSKANERPARPEAAVKGIAPAQPAPMA
APEPAPASAPAPAAPEPKGLIARIMGWFSAGKGAAEPVPAPVVEETPKREARPRGERSGE
GRRNGGSNGGRGRRGERDGEAQPSTRGSRAERGESTERPQRVAAERAERPERAERPERAE
RPERAERSEGGRRGRGQRGERAQEGAEQRAAQTEDDLLKAATATAMVAAATTADSGTTET
VASTEGGEEEGTPSEKRRRRGRGRGRRSGEPQGIDGAAEAGNEAETGAKAPEGELPGIAA
SAVEQGTVESAHAASPVTTGQDANVGAAATAVVQTAPADAQIAELPIVGGTAEDVTPVAL
AAPQVPLAPVPVGAALEVVAETAPAAEVPVDKALAAEAVLAEQGAAAEELAAGSAATVEA
VSAAAPRAETAAMIDSASAEEAPPAVASAAGEEAVIGTEPVAVAEPAPTSSAGVPPEVAA
AAPEAVPAPLADSTEVAEPSVPAAAESTVVRAMEAGRASHAPSAPIAVPSGDSGLIRIET
DPAKRVQFGTGAPEQPARLGRQPRPAAVIAEEPLQQVETRK
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgcttttcaatgcgacgcaggccgaagaactgcgcgtcgcgatcgtggac
ggtcagaaactgatcgacctcgatatcgaatcggccgccaaggaagaacgcaagagcaac
atctacaaggccgtcatcacccgcatcgagcccagcctcgaggcggcgttcgtggactac
ggtgccgaccgccacggcttcctgccgttcaaggagatctcgcgttcctacttccagcct
ggtgcggacgccaaggcctcgatcaaggaagccctgaaggaaggccaggaactcatcgtc
caggtcgagaaggacgagcgcggcaacaagggtgcggcgctcaccacctacatctcgctg
gccggccgctatctggtgctgatgcccaacaacccgcgcggcggtggcgtctcgcgccgc
gtcgagggtgacgagcgcgccgaactgcgcgagaacatggatcagctcgacgtcccccag
ggcatgagcctgatcgcgcgcaccgcggcgatcggccgcagcgccgaagagctgcagtgg
gacctcaactatctgctgcagctgtggaccgccatcgaaggcgcggcacagggccagtcc
ggcgccttcctgatctaccaggaaggcagtctggtgatccgcgcgatccgcgactacttc
cagcccgacatcggcgagatcctgatcgacaccgacgacatcttcgagcaggccacgcag
ttcatggcccacgtgatgccgggcaacgtcgcccgcgtgaagcgctacagcgacgacgtg
ccgctgttctcgcgcttccagatcgagcaccagatcgagtcggcctattcgcgccaggtg
aacctgccctcgggcggtgccgtggtgatcgaccataccgaggcgctggtgtcgatcgac
gtcaactcgggccgcgccaccaagggctcggacatcgaggagaccgccttccgcaccaac
tgcgaggcggccgacgagatcgcccgccagctccgcctgcgcgacctcggcggcctcatc
gtcatcgatttcatcgacatggaatcggccaagaaccagcgcgaggtcgagaaccgcctg
cgcgacgcgctgcgccacgaccgcgcccgcgtgcagaccggcaagatcagccgcttcggc
ctgctcgagctgtcgcgccagcgcctgcgcccggcgctcgccgaaaccagctacatcacc
tgcccgcgctgcaacggcaccggccacatccgcagcaccgaatcgtcggcgctgcacatc
gtgcgcatcctcgaagaagaggcgatgaaggacaataccggcgcggtgcacctgcaggtg
ccggtcgatgtcgccaccttcctgctcaacgagaagcgggtcgacatcgcgcgcatcgag
atgcgccacaaggtgcagctcatcatcgttccgaaccgccatctcgagacgccggcgcac
gagatcatccgcctgcgccacgaccagctcaacaccgaggacatcgccctggcgagctat
cagatggtgcagaagccggtcgaagaggacacccgcctgccctccaaggccaacgagcgc
ccggcacgccccgaggccgcggtgaagggcatcgcccccgcgcagcctgccccgatggct
gcacccgagcccgctcccgcctcggccccggcccctgccgcgcccgagcccaaggggctg
atcgcgcgcatcatgggctggttctccgccggcaagggcgccgcggaaccggtccccgcc
ccggtcgtggaagagactccgaaacgcgaggcgcgcccgcgtggcgaacgcagcggcgag
ggtcgccgcaatggcggcagcaatggcggccgtggccgtcgcggcgagcgcgacggcgag
gcgcagccctccacccgcggcagccgtgccgagcgtggcgagagcaccgagcgcccgcag
cgcgtcgcggccgagcgtgccgagcgccccgagcgtgccgagcgccccgagcgtgctgaa
cgccccgagcgtgccgagcgcagcgaaggcggccgccgtggtcgcggccagcgcggcgag
cgtgcccaggaaggcgccgagcagcgcgcggcccagaccgaggacgatctgctgaaggcc
gccaccgccactgcgatggtggcagcggccacgacggcggactccggcacgaccgagacc
gttgccagcacggaaggcggcgaagaggaaggcaccccgtccgagaagcgccgccgtcgc
ggccgtggccgcggccgtcgctcgggcgagccgcagggcatcgacggcgccgccgaagcg
ggtaacgaagccgagaccggggcgaaagcgcccgagggcgaactgccgggaatcgcggcg
tccgccgtcgagcaggggaccgtcgagtccgcgcacgctgccagcccggtcacgaccgga
caggacgcgaacgtcggcgctgccgccacagccgtggtgcaaaccgctccggcggatgcg
cagatcgccgaactgccgatcgtcggcggcaccgcggaggacgtcacaccggtcgccctg
gccgcacctcaggtgccgcttgccccggtgccggtcggcgcagcgctggaagtcgtcgct
gaaacggcgcctgccgcggaggtcccggtcgacaaggcccttgcggccgaagcggtgctc
gccgagcaaggtgctgctgccgaagagcttgccgccgggagtgctgccacggtcgaagcg
gtatccgccgcggcgccccgtgccgagaccgctgccatgatcgattcggcttctgccgag
gaagcgccgcctgcggtcgcctccgcagcgggcgaggaggcggtcatcggcaccgaaccc
gtcgcggtcgccgagcccgcccccacgtcgagcgccggcgtcccccccgaggtcgccgcc
gcagcgccggaagccgtgccagccccgctcgcggattcgacggaggtcgccgaaccgtcc
gtgcctgcggcagccgagtcgacggtggttcgcgcgatggaagccggccgtgccagccac
gcgccgagcgcaccgatcgcggtgccgtccggcgacagcggcctgatcaggatcgagacc
gatccggccaagcgcgtgcagttcggcaccggcgccccggagcagccggcacgcctgggc
cgccagccccgcccggccgcagtgatcgccgaagagccgctgcaacaggtcgagacccgc
aagtaa
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