Thauera aminoaromatica: Tmz1t_3671
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Entry
Tmz1t_3671 CDS
T00804
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tmz
Thauera aminoaromatica
Brite
KEGG Orthology (KO) [BR:
tmz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmz03019
]
Tmz1t_3671
Enzymes [BR:
tmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Tmz1t_3671
Messenger RNA biogenesis [BR:
tmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Tmz1t_3671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
T2SSE
NACHT
nSTAND3
SRP54
AAA_30
AAA_23
FtsK_SpoIIIE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACR02264
UniProt:
C4KC73
LinkDB
All DBs
Position
complement(4030137..4034372)
Genome browser
AA seq
1411 aa
AA seq
DB search
MRAEHKGARRPSALPNFDDCLSGDRPRLRRMARDLSHPSRADERATAQRLRLRADFDALL
ERSRAALRARRAALPVPDFPPELPVSGRRDEIATALAAHQVIIVCGETGSGKTTQLPKIA
MTLGRGVAGLIGHTQPRRLAARATASRIAQELKSPLGEVVGYKIRFTDKTGERSHVKLMT
DGILLAETQTDPLLAAYDTLIIDEAHERSLNIDFLLGYLKTLLPRRPDLKVVVTSATLDA
ERFARHFADAAGKPAPVIEVSGRLYPIEMRYRPVESEEIDPAAAARSAAKGGREAAKDRS
RDLMDALVDAVDEAQRCGPGDVLVFLPGEREIREAAEALRKAHHLPGTEILPLFARQSAQ
EQARVFSASNGRRVVLSTNVAETSLTVPGIRYVVDTGLARIKRYSPRNKVEQLQVEKIAR
SAAQQRAGRCGRVMDGICIRLYDEDDFNRRPAHTDPEILRSSLAGVILRMKALKLGAVED
FPFIDAPGARLIGDGYALLAELGAVSDDDERKLTPTGVELAKLPLDPRIGRMILAARDRG
ALAELLVIAAALSVQDPRERPQDSPGAADQAHARFRGGEQDQKSEFLWYWHLWKAWDEVQ
RHESSSKQKAWCKKHFLNYMRMREWRDVFAQLHTLCAEHGWKENEQPANYEAIHKALLAG
LLGNIGCKVEDASGPQAGAYLGARGIKFWPHPGSALAKKAGKWIMAAEQVETSRLFGRCI
ARIEPEWVEEVGGHLIKRQVFEPHWSKASGAVRAWERGTLYGLVIYPRRGVAYRDIDPAL
CRELFIREGLVQGEIAEGPARAMAFLAHNQRLVAEIERLEHKSRRPDVLVDETLIEAFYD
SKLPAEVCDLAGLEAWRKPAEKAEPKLLHLSREQLMRHDAEGVTTDRFPPTLEVLGQKLK
LAYLHQPGEADDGVTLAVPLAMLNQIPANRCEWLVPGLLEEKVAALMKTVPQKHRHRLQP
VAESAAAFMAVFEAGEFDTDEPLLKMLQRFVEERVQLKLPLESFRPENLKPHCFMNFRVI
DEHGRLMGQSRNLMELRARFREQVAARFSAAKIGGALAGALSVVGVGGAGGGQGVGAGGA
GVSARGAGSDAVAGEVAGRARSGADARDAAADVGGRAGAGQPGGKGSGKAAGDPAGRSAA
PAELPAPVLSGFTAWTFGALPELLEVRVAGREVIGFPALHDDGDSVSLRPHDTPEEASRV
HRRGLARLFALNLKDQVRAVERLPGLRELALQYMGFGTEAELKARLIEATLGRCCLLEPL
PTDADAFAKRCAEAKSRVSLVAQEFMRLTGQLLVEHAALQKRLSGLKTFPEVVADIQGQL
GALLPKDFLVAFEWDKLAHFARYLKGAAVRLDKLRNNPARDAPGHGGVEAARPGLGARAP
RPPARGRGRSGAGRVPLAAGGVARGLVRAGA
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgagggctgaacacaagggcgcgcgccgcccgtccgcgctgccgaacttcgatgactgt
ctgagcggcgaccgcccgcgcctgcgccgcatggcgcgcgacctctcccacccgtcacgc
gcggacgagcgcgccacggcgcagcgcctgcgcctgcgggcggacttcgatgccctgctc
gaacgctcgcgcgccgcgctgcgcgcacgccgcgccgccttgcccgtgccggacttcccg
cccgagctgccagtgtccgggcgccgcgacgagatcgccacggccctcgccgcccaccag
gtcatcatcgtgtgcggcgagaccggctcgggcaagaccacccagctgccgaagatcgcg
atgacgctcggccgcggcgtcgccggcctcatcggccacacccagccgcgtcgcctggcc
gcacgcgccaccgcgagccgcatcgcgcaggagctcaagagcccgctcggcgaggtcgtg
ggctacaagatccgcttcaccgacaagaccggcgagcgcagccacgtcaagctgatgacc
gacggcattctgctcgccgagacccagaccgacccgctgctcgccgcctacgacacgctg
atcatcgacgaggcgcacgagcgcagcctcaacatcgatttcctgctcggctacctgaag
accctgctgccacgccggccggatctgaaggtggtggtgacctcggcgacgctggatgcc
gagcgtttcgcccggcactttgccgatgccgcgggcaagccggcgccggtgatcgaggtg
tcgggccggttgtatccgatcgagatgcgctaccggccggtggagagcgaggagattgac
cccgccgcggccgcgcgcagcgccgccaagggtggcagggaggccgccaaggacaggagc
cgcgacctcatggacgcgctggtcgatgcggtcgacgaggcccagcgctgcggcccgggt
gacgtgctggttttcctgcccggcgagcgcgagatccgcgaggccgccgaggcgctgcgc
aaggcgcaccacctgcccggcaccgagatcctgccgctgttcgcgcgccagtcggcgcag
gagcaagcgcgcgtgttctcggcctccaacggccgccgggtggtgctgtcgaccaacgtc
gccgagacctcgctgaccgtgccgggcatccgctacgtggtcgacaccggactcgcgcgc
atcaagcgctactcgccgcgcaacaaggtcgagcagctgcaggtcgagaagatcgcccgg
tcggccgcgcagcagcgcgccgggcgctgcggtcgtgtcatggacggcatctgcatccgc
ctctacgacgaggacgacttcaaccgccgcccggcgcacaccgatcccgagatcctgcgg
tcgtcgctcgccggcgtgatcctgcgcatgaaggccctgaagctcggcgcggtggaggac
ttccccttcatcgacgcgcccggcgcgcgcctgatcggcgacggctacgcgctgctggcc
gagttgggcgcggtcagcgacgacgatgaacgcaagctcaccccgaccggcgtcgagctc
gccaagctgccgctcgacccgcgcatcggccgcatgatcctggccgcgcgcgaccgtggc
gcgctcgccgagttgctggtgatcgccgccgcgctgtcggtgcaggacccgcgcgagcgc
ccgcaggacagcccgggtgccgccgaccaggcgcacgccaggttccgcggcggggagcag
gatcagaagtccgagttcctgtggtactggcacctgtggaaggcctgggacgaggtccag
cgccacgagtcctccagcaagcagaaggcctggtgcaagaagcacttcctcaactacatg
cgcatgcgcgagtggcgcgatgtgttcgcccagctccacaccctgtgcgccgagcacggc
tggaaggagaacgaacagccggcgaactacgaggcgatccacaaggcgctgctcgccggg
ctgctcggcaacatcggctgcaaggtcgaggatgcctcggggccgcaggccggcgcctac
ctcggcgcgcgcgggatcaagttctggccgcacccgggctccgcgctggcgaagaaggcc
ggaaagtggatcatggccgccgagcaggtcgagaccagccgcttgttcgggcgctgcatc
gcgcgcatcgagccggagtgggtggaggaggtcggcggccacctgatcaagcgccaggtg
ttcgagccgcactggtcgaaggcgtccggcgcggtgcgcgcctgggagcgcggcacgctg
tacggactggtgatctatccgcgccgcggcgtggcctatcgcgacatcgaccccgcgctg
tgccgcgagctcttcatccgcgagggcctggtgcagggcgagatcgccgaggggccggcg
cgcgcgatggccttcctcgcccataaccagcgcctggtggcggagatcgagcgcctcgag
cacaagtcgcgccgccccgacgtgctggtggacgagaccctgatcgaggccttctacgac
agcaagctccccgcggaggtctgcgacctggcggggctggaggcgtggcgcaagccggcg
gagaaggccgagcccaagctgctgcatctgtcgcgcgagcaactgatgcgccacgacgcg
gaaggggtgaccaccgaccgtttcccgccgacgctggaggtgctcgggcagaagttgaag
ctcgcctatctgcaccagcctggcgaggccgacgacggcgtgacgctcgcggtgccgctg
gcgatgctcaaccagatccccgccaaccgctgcgagtggctggtgccgggactgctcgaa
gagaaggttgcggcgctgatgaagaccgtgccgcagaagcaccgccaccgcctgcagccg
gtggccgagagcgcggcggccttcatggcggtcttcgaggccggcgagttcgacaccgac
gagccgctgctgaagatgctgcaacgcttcgtggaggagcgcgtgcagttgaagctgccg
ctggagagcttccgcccggagaacctgaagccgcactgcttcatgaacttccgcgtgatc
gacgagcacggccgcttgatggggcagtcgcgcaacctgatggagctgcgtgcgcgcttc
cgcgagcaggtggcggcgcgcttctcggcggcgaagatcggcggcgcgctcgcgggggcg
ctgtcggtggtgggcgtcgggggcgcgggtggtggccaaggcgtcggtgccggcggagcg
ggcgtcagcgcgcggggggccggatccgacgccgttgcgggcgaggtcgccggccgtgcg
cgctccggcgcggatgcgcgtgatgccgcggcggatgtgggtggccgtgccggggcgggg
cagccggggggcaaagggagcggcaaggcggcgggcgacccggcaggccggagcgctgcg
cctgccgaactcccggcgccggtgctgtccggcttcactgcgtggactttcggcgccctg
cccgagttgctcgaggtgcgcgtcgccggccgtgaggtgatcggttttcctgcgctgcac
gacgatggcgacagcgtctcgttacgcccccacgacacgcccgaggaggcgtcgcgcgtg
catcgccgcggcctcgcccgcctgttcgcgctcaacctcaaggatcaggtgcgcgcggtc
gagcgtctgcccggcttgcgcgagctcgcgctgcagtacatgggcttcggcaccgaggcc
gagctgaaggcgcgcctgatcgaggcgacgctgggccgctgctgcctgctcgagcctttg
cctacggatgccgacgcgttcgcgaagcgctgcgccgaggccaagtcgcgggtgagcctg
gttgcgcaggagttcatgcgcctgaccggccagctgctggtcgagcatgcggcgctgcag
aagcgcctgtccgggctgaagacctttcccgaggtggtggccgatatccagggccagctc
ggtgcgctgctgccgaaggacttcctcgtcgccttcgagtgggacaagctggcgcacttc
gcacgctatctcaagggtgccgcggtgcggctcgacaaactccgcaacaatccggcgcgc
gacgccccaggccatggcggagtggaagcagctcgcccaggcctgggagcgcgagcgcct
cgcccgccggcgcgcgggcgtggaagatccggcgctggaagagttccgctggctgctgga
ggagttgcgcgtgggcttgtacgcgcaggagcttag
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