Thermotoga neapolitana: CTN_1043
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Entry
CTN_1043 CDS
T00847
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tna
Thermotoga neapolitana
Pathway
tna03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tna00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTN_1043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tna03400
]
CTN_1043
Enzymes [BR:
tna01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTN_1043
DNA repair and recombination proteins [BR:
tna03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTN_1043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_22
AAA_30
AAA_16
SecA_DEAD
UB2H
AAA_25
IstB_IS21
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACM23219
UniProt:
B9K8D6
LinkDB
All DBs
Position
complement(1013308..1015995)
Genome browser
AA seq
895 aa
AA seq
DB search
MVEILLVPNEREIHLEGYLFYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGENLKIVTT
LKALTEKIFSPESLKERTIEVRRSASFYLSPERFVEMGYERTFTVQMPGEFSIRGGILDI
FSPGYDFPVRIELFGEVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSSLLDFVKDVR
FTCENLEKALTEYRKIRKELKDLLKEKYDLFFDEGVLERVLKNVEKTSAGATVSSGIEER
SLPLVDIDEIEEGELVVHKEHGIAIFEGMIRLKSVLGERDYLKLKYEDAVLYVPVEKIDR
VHRYIGDPSQVKLDRLNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPEL
EEKFAETFPYIETPDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSG
KQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIG
THALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMALSG
MKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVLENL
KRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDDAH
RYGLAQLYQLRGRVGRSDRRAFAYFLYPKGVPKSALERLRVLKAHTGPGSGLQIAMKDME
MRGIGDVLGLEQHGNIISIGLKLYNEILRETVTKVKKKRVERKHTVQIEIENPPGRFFIP
EDYISNPVERLRMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLLLDYFRIRIRASKL
GIRKIRFDHFMVELLPGKNSPLLKHPGYNPRSGTVVLYKRGDPIEYLLKILKNEG
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaatacttctggttccaaatgaaagagagatacatctagaaggatatctcttc
tatccctcgagagacaacctgcctctcgaagatgttcctctatcacctgaagtgaaaaag
aagaggatggagatcctctggaggcttctcaaaggtgaaaatctaaaaatcgtcaccacc
ctgaaagcccttaccgaaaagattttctcaccggaatctttgaaggaaagaaccatcgaa
gtcagacgttctgcttcgttctatctttcccccgaaaggttcgtggaaatgggatacgaa
aggaccttcaccgttcaaatgccgggggagttctccatcagaggtggaatcctggacatc
ttctctccaggatacgactttcccgtgaggatagaactctttggagaagtcgtggaagac
atcagattcttcgatgtttccactcagagatctttccagaaagtcgacgaggtttatatt
ctaccctttctcgatgaatacggagacagttcactgctcgactttgtaaaggatgtacgt
ttcacctgtgagaatctggagaaagccctgacggaataccgaaagataagaaaagagttg
aaagacctattaaaggaaaaatacgatctgttcttcgatgaaggtgtcctggaaagagtt
ctgaaaaacgtggagaagacatccgccggtgcaaccgtctcttctggtatcgaggagaga
tcgcttcccctggtggacatcgacgaaatagaagagggagaactcgtcgttcacaaagaa
cacggaatcgccatcttcgaaggcatgatcagattgaagagtgttcttggagagcgggac
tatctaaaactgaagtacgaagatgcggttctttatgttccagttgaaaaaattgacagg
gtacacagatacataggtgacccatctcaggtaaaactcgacagattgaacaggggaaga
tggaagagaacgctgaaaaaagtacgggaagacatcgaaaaaagggtacgagaactcgtt
gaactttacctgaagagagaagaagtgagaggaacactacttcccggtgatcccgaactg
gaagaaaaattcgcggaaacctttccatacatagaaacccctgaccagcagaaatgcata
gaagaagttctgactgacctgtcatcggagaaacccatggacagactgttatgtggtgat
gctggagtgggcaaaacggaagtggcacttcgtgctgcctttcgcgctgtggtatccggg
aaacaggtggcagtacttgttcccaccactgtgcttgccagacagcactatgagaacttc
aaagaaagactcgagcctttcggtgttagagttgaacttctcgacagttccagaacgctg
cgggaaagaaaagagatactggaaggactgaaaaagggtgaaatagacgtcgtaatagga
acgcatgctcttttgaacgaaagagtggaattttcagatcttggactcgtcatcatcgac
gaggaacaaaagttcggtgttgaacagaaagaaaaattcaaaaagatgagactttctgtg
aacgttctctccctgagtgccacgccaattccgcgaacgctccacatggcgctctccggg
atgaaggacctttctgtgataaacgctcctccacctggtcgaaaacctgtgcacgtttac
attgctgaatacaacgaagaactggtgaaaggggccgtcgtgagagaggtgaacagagga
ggacaggtgatctacgtccacaacagggtggaagaacttccagaggtgctcgaaaacctg
aagaggatgtttccagaactcagaatagcaatggcacacggtaagatgtccagaagagtc
atggaaaaggtcgttcatgagttctacagtggaaacatcgacgttcttttgtgtacaacg
atcatcgaaaacggcgttgatataccgaacgccaacacgctgatcgtcgacgatgctcac
aggtacggtcttgcccagctctatcagctcaggggaagggtgggaaggagtgataggagg
gctttcgcgtactttctgtatccaaaaggggttccaaaaagtgctctggaaagactcagg
gtgctcaaggcacacacaggtccaggcagtggtctgcagattgccatgaaagacatggag
atgcggggtatcggagatgttctgggactggagcagcacggaaacatcatctccattggt
ttgaaactgtacaacgaaatcctgagggaaactgtgacaaaggtgaagaaaaaacgggta
gagagaaagcacaccgttcaaattgagatagaaaatcctccaggcaggttcttcatacct
gaggattacatttcaaaccccgtggaaagactgagaatgtacagaagacttgcgtccgct
tctgaagagggggaaatagaagagatactggaagaaatgagggatcgattcggagagccg
ccagaagaggtgaaactgcttctggattacttcagaataagaataagagcatcaaaactg
ggtataagaaaaatcagattcgaccacttcatggtggaactccttccgggtaaaaattct
ccacttttgaaacatccagggtacaatccaagatccggtactgtcgtcctgtacaaaagg
ggtgatccgatagagtatcttctgaagattttgaaaaatgaagggtga
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