Pyrobaculum neutrophilum: Tneu_1983
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Entry
Tneu_1983 CDS
T00682
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tne
Pyrobaculum neutrophilum
Pathway
tne04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tne00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Tneu_1983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tne03019
]
Tneu_1983
03009 Ribosome biogenesis [BR:
tne03009
]
Tneu_1983
04131 Membrane trafficking [BR:
tne04131
]
Tneu_1983
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tne04147
]
Tneu_1983
Messenger RNA biogenesis [BR:
tne03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Tneu_1983
Ribosome biogenesis [BR:
tne03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Tneu_1983
Membrane trafficking [BR:
tne04131
]
SNARE
SNARE associated proteins
Others
Tneu_1983
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Tneu_1983
Exosome [BR:
tne04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Tneu_1983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
TIP49
AAA_22
AAA_5
AAA_33
AAA_14
AAA_2
AAA_28
AAA_lid_PRS2_C
IstB_IS21
Vps4_C
nSTAND3
AAA_18
Mg_chelatase
UFD1_N2
RNA_helicase
AAA_24
DUF815
Sigma54_activat
ABC_tran
PhoH
AAA_7
Zeta_toxin
NPHP3_N
Parvo_NS1
ATPase
AAA_17
AAA_19
SLFN-g3_helicase
AAA_30
Molydop_binding
CryBP1
Motif
Other DBs
NCBI-ProteinID:
ACB40898
UniProt:
B1YC44
LinkDB
All DBs
Position
1745258..1747453
Genome browser
AA seq
731 aa
AA seq
DB search
MSEWIELRVLESKARDANRPVVRIDPEVMEKSGIVVGDVVEIVGRRRTAAKVWNGLPEDR
GRGVIRMNSILRKNADVSLNETVRVRKVEPKPAAFVKLAPVSMTIAVDANFLQYIKQRLR
EYIVVEGDMLQIYVLSQPLTFQVVQTKPSNAVLVITEDTQIQIFEKPVSGVRIPHVTWED
IGDLEDAKQKIRELVELPLRHPELFKHLGIEPPKGILLIGPPGTGKTLLAKAVANEANAY
FVAINGPEIMSKYYGESEARLREIFEEAKKNAPAIIFIDEIDAIAPKREEVTGEVEKRVV
AQLLTLMDGLQERGQVVVIGATNRPDAVDPALRRPGRFDREIWINPPDFKGRYEILLIHT
RNMPLAPDVDLRKLAETTHGFSGADLAALAREAAMSALRRAIQSGLIDLNQPTIPPETFE
KIKVTMADFVNALREIVPSALREIHIEVPRVRWEDIGGLENVKQELREAVEWPLKYPDKF
KKFGLRPPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIF
RKARMAAPAVIFIDEIDALATARGFGGDSLVSERVVAQLLAEMDGVKALENVVVIAATNR
PDLVDPALLRPGRFDRIIYVPPPDFKARLDILLIHTRTTPLSKDVDLEELARRTEGYSGA
DLELLVREATFLALREDINAREVSMRHFEEALKKVRPSIALDMLKFYETWLEKARQLHVA
AKAKATPPLYL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgagtggatagagcttagagttctagagagcaaggcccgggacgccaaccgtccc
gtcgttaggattgaccccgaggtcatggagaagtccgggatagtagtcggcgacgtggtg
gagatagtcggccgcaggaggaccgcggctaaggtgtggaacgggcttcccgaggaccgc
ggccgtggcgtcatccggatgaacagcatcttgaggaagaacgcagacgtgtccctcaac
gagacggttagagtgaggaaggttgagccaaagcccgcggcctttgtcaaactcgccccc
gtttcaatgaccatcgccgtagatgccaacttcctacagtacataaagcagaggcttagg
gagtacatcgtcgtcgaaggcgatatgttgcagatctatgtgctgagccagccgctgacg
ttccaggtggttcagaccaagccgtcaaacgcggtgttagtcatcacggaggacacccag
atccagatctttgaaaagcccgtctccggcgttaggataccccacgtgacctgggaggat
attggtgatttggaggatgctaagcagaagattcgtgagcttgtggagcttcctcttagg
catcctgagttgtttaagcatttgggtattgagcctccgaagggtatcctcttgattggc
cctccgggcactggcaagaccctcctcgccaaggctgtggctaacgaggctaacgcctac
ttcgtcgccataaacggccccgagatcatgtctaagtactacggcgagtcagaggcgcgg
cttagggagatcttcgaagaggcgaagaagaacgcccccgccataatcttcatagacgag
atagacgccatagcccccaaacgcgaggaggtcacgggggaggtggagaagcgggtggtg
gcccagctactaaccctaatggacgggctacaagagagaggacaggtagtggtaatagga
gcaaccaaccgcccagacgcagtagacccagcgttgagaagaccaggaagattcgacaga
gagatctggataaacccgccggacttcaaggggaggtatgagatcctcctgatccacacc
aggaacatgcctcttgccccagacgtagatcttaggaagcttgctgagacgacccacggc
ttctccggagcggatctggcggcgcttgcgagagaggccgcgatgtctgccctcaggagg
gcgatacagagcggtctgatagacctcaaccagcccactatcccgcctgagacgtttgag
aagatcaaggtgacaatggccgatttcgtcaacgcgcttagggagatagttccgtctgcg
ctgagggagatacacatagaggttcccagagtccgctgggaggacataggagggttggag
aacgtaaaacaggagttgagagaggccgtggagtggccgttgaagtacccagataagttc
aagaagtttggccttaggcctcccaagggcatactgctcttcgggccgcccggcaccggc
aagacgcttctggctaaggccgtggccaccgagtccggcgccaacttcatagcagttagg
gggcccgagatcttctccaagtgggtgggggagtcggagaagatggttagggagatattt
aggaaggctcggatggccgcgccagccgtgatattcatcgacgagatagacgcgctggcc
acagccaggggtttcggcggcgattcgctggtgagcgagcgcgttgtggcgcagctacta
gccgagatggacggcgttaaagctctggagaacgtggtggttatcgcggctacaaatagg
cccgatctcgtcgacccggcgttgctgagacccggccgctttgacaggataatatacgtg
cccccgcccgacttcaaggccaggctggatatcttgcttatacatacgaggacgaccccg
ctctctaaagacgtagacctggaggagcttgcgcgtaggacagagggttactccggcgcc
gatctagagctactcgtgagagaggccaccttcctggcgctacgggaggatataaacgcg
agggaggtctcgatgcgccacttcgaggaggcgcttaagaaggttaggccctccatagcg
cttgacatgttgaagttctacgagacctggttggagaaggcgaggcaacttcacgtggcg
gctaaggcaaaggccacgccgcctctatatctatga
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