Tetraodon nigroviridis (spotted green pufferfish): GSTEN00003437G001
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Entry
GSTEN00003437G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00003437G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00003437G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00003437G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00003437G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-ProteinID:
CAF89507
UniProt:
Q4TC75
LinkDB
All DBs
Position
undetermined
AA seq
560 aa
AA seq
DB search
QVTQGMFGANRKKFLEGGVEEYSDDSSLYYSQQSMFPPHRPEKDMLTSSSAPSTGQLSQL
GASLYGPQNQSQRSEPGRQPAAQSYQCARLWRHAHAALAQQGDSAHEQPERAEPQPGGRT
HGPDRWDGGRGEGRGQRRCGSRQERQHRESRQGVAQHHRHAQAAAGQAAVHHQQVHTHSH
TVREGVCVCVTPVAPPSMSGFGVSRNPGFNMNTSLSNNIFNGTGTHAAHASSATAGGPLS
VCVCVCVCVCVCVRACVHACVRALDGSENVTSLDLSDFPALADRSRRDAASNPAPLPNPL
AGRAPYVGMVTKPSGEQSQDFSIHNEDFPGTAGAQLPDQRAQRQQRRQQSKPEFVRKVGR
RLGRAQVPRRQESAPSNNNQQKKGIQVLLTVRHTHTYTHTRTCAGVTLWYSNRTSDQHPG
WHGNRPVWDDRLVDVHPSGGDGPRHGPPGAGLGPDHAGPQPQLPRVGRVHAHTHTQPQSS
LTRSSLPVRNLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLSRYGEDLL
FYLYYMNGGDLLQLLAAVEL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
caggtgacacaagggatgtttggtgctaaccggaagaagtttctggagggaggagtggag
gagtacagcgacgactccagcctctactactcccagcagtccatgttccctccacaccgc
ccagaaaaggacatgttgacgtcttcctcggctccgtccacgggtcagctgtcccagctg
ggagccagtttgtacggcccacagaatcagtcgcagcgctctgaacccggccgccagcca
gctgcccagtcataccagtgcgcccggctctggcgccatgcacacgccgccctcgcccag
cagggggattctgcccatgagcagccggagcgtgctgaaccacagccaggtgggcggacc
cacgggccagacaggtgggatggtgggcggggagaggggcggggccagcgcaggtgtggg
agccggcaggagcggcagcatcgggagtcccggcagggggtcgcccagcatcatcggcat
gcccaagcagcagccggccaggcagccgttcaccatcaacaggtgcacacacactcacac
acagtgcgtgagggtgtgtgtgtgtgtgtgacgcctgtggctcctcccagcatgtccggg
ttcggggtcagcaggaatccgggcttcaacatgaacacctccctgtccaacaacatcttc
aacgggacaggtacccacgccgcgcacgcttccagcgccaccgccggcggccccctgagt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcatgcgtgc
gtgcgcgcgctagacggcagtgagaacgtgaccagtctggacctgtcagacttcccggct
ctggccgacaggagtcggagggacgccgcatccaacccggcgccgctgcccaacccgctg
gccggtcgggccccctacgtcggcatggtgaccaagccgtccggcgaacagtcgcaggac
ttctccatccacaacgaggacttccccggcactgccggggcccaactaccagatcaaaga
gcccagcggcagcagcgacgacaacaaagcaaacctgagttcgtcaggaaagtcggccgc
cggctcggaagggcccaagttccccggcgacaagagtccgcccctagcaacaacaaccag
cagaagaaaggcatccaggtgcttctgacggtgagacacacacacacgtacacgcacaca
cgcacctgcgcaggagtgacgctgtggtactccaacaggacgagtgaccaacatcccggt
tggcatggtaaccgaccagtttgggatgatcggcttgttgacgttcatccgagcggcgga
gacggaccccggcatggtccacctggcgctgggctcggacctgaccacgctgggcctcaa
cctcaactcccccgagtaggacgcgtgcacgcgcacacacacacacagccacagtcgtcg
ctcacccgctcgtctctgcccgtcaggaacctgtaccccaagtttgcgtctccgtgggcg
tcgtctccgtgccgacctcaggacatcgacttccacgtcccctccgagtatttaaccaac
atccacatcagagacaagttagccgccatcaagctgtctcgctacggcgaagatctgctc
ttttacctctactacatgaacggaggagacctgctacaactgctggcagccgtagaactg
tga
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