Tetraodon nigroviridis (spotted green pufferfish): GSTEN00003449G001
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Entry
GSTEN00003449G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00003449G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tng03021
]
GSTEN00003449G001
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00003449G001
Transcription machinery [BR:
tng03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GSTEN00003449G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GSTEN00003449G001
U7-dependent histone pre-mRNA processing factors
GSTEN00003449G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-Casp
CPSF73-100_C
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_6
Lactamase_B_2
Lactamase_B_3
TSP3_bac
Motif
Other DBs
NCBI-ProteinID:
CAF89519
UniProt:
Q4TC63
LinkDB
All DBs
Position
undetermined
AA seq
810 aa
AA seq
DB search
VPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE
IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVRWEPESRPGG
RRSVLAEVTAGCPLVLPQQHFCRRHAVHGDRPGGEHGEDRDHQLPRGQRGGWHQVLVLPR
RPRARSRHVHDRDRWSQAVVHRGLFPPGGPPPDGSRDSQRETRYSDHCEQLEQRGRVHPP
VWSLSDRVCVPVVRLSLSQESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALG
RAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAININNPFV
FKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLA
KHIMSEPDEITTMSGQKLALKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEM
ARLKAALIREYEDNDEVHIEVHNPRNTEAVTLYFRGEKLAKVRRLRPLPPRLSSLPECSA
AGDGLADGQEVRAGSEGFWDPGQEELQLPHHDAHRPAQSVTSHTRARVCARLVVTQRRVC
GVSRLHGPVCGDGDPDPGHPLHRAHLPAGQPAPQPHRSVSHHASVPPASCVCVQLGGGPE
SVCVCSGDVEQVEGASKITIRIFKSVTLVHEGGMVLLEWVANPLTDMYADVVTTVVLEVQ
SNPNAQKREAAAAAAAWMRAGVFAERLELMLQDMFGDDCVAFKDGRASVTVDGATVSIHT
QTRAVCSEDESLKEMVEVAVQRLYDALSPS
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
gttcctgcggaagaaagcgatcagctgttgattcgacctctaggtgccgggcaggaggtg
ggacgatcatgtatcattctggagttcaagggacgaaaaataatgctggactgcggcatc
catcctggtctggagggcatggatgctctgccttacatcgacctgattgatcctgctgag
atcgacctgctgctcatcagccacttccacctggatcattgtggggctcttccctggttc
ctgcagaagaccagctttaaaggacgcaccttcatgactcacgccaccaaagccatttac
cggtggctgctgtcggactacgtcaaagtcaggtgggagccggagagccgtcctggcggc
cggaggtccgtcctggccgaggttacagccggctgtcccctggtcctcccgcagcaacat
ttctgcagacgacatgctgtacacggagaccgacctggaggagagcatggagaagatcga
gaccatcaacttccacgaggtcaaagaggtggctggcatcaagttctggtgctaccacgc
cggccacgtgctcggagccgccatgttcatgatcgagatcgctggagtcaagctgttgta
cacaggggacttttcccgccaggaggaccgccacctgatggcagccgagattcccagcgt
gaaaccagatattctgatcactgtgagcagctggagcagagaggacgagtccacccgccc
gtctggagtctttctgaccgcgtctgtgtgcctgtcgtccgcctgtccctgtcccaggag
tccacctatgggactcacattcatgagaagagggaggagcgggaggcccgcttctgtaac
accgtccatgacatcgtcaacagggaaggccggtgtctcatccccgtcttcgctctgggc
cgagctcaggagctgcttctcattcttgacgagtactggcagaaccacccggagctgcac
gacatccccatctactacgcctcctctctggcgcgcaagtgcatggccgtctaccagacc
tacatcaacgccatgaacgacaagatccgcaaggccatcaacatcaacaaccccttcgtc
ttcaaacacatcagcaacctgaagagcatggaccacttcgacgacatcgggcccagcgtg
gtgatggcgtccccgggcatgatgcagagcggcctgtccagagagctcttcgagagctgg
tgcaccgacaagaggaacggcgtcatcatcgccggctactgcgtggaggggacgctggcc
aagcacatcatgtcggagcctgatgagatcaccaccatgtcgggtcagaagctggctctg
aagatgtcggtggactacatctccttctcggctcacacagactaccagcagaccagcgag
ttcatccgggccctcaaacctcctcacgtgatcctggtccacggcgagcagaacgagatg
gcccgtctgaaagccgcattgatccgagaatacgaagacaacgacgaggtccacatcgag
gtccacaaccccaggaacacggaggccgtcacgctctacttcagaggagagaagctggcc
aaggtcaggaggctccgcccactccccccgcgcctctcctcactcccagaatgctctgct
gcaggtgatgggctcgctgacggacaggaagtgcgcgcagggtcagagggtttctgggat
cctggtcaagaggaacttcaactaccacatcatgacgcccaccgacctgcccagtcagtc
acgtcacacacgcgcgcgcgtgtgtgcgcgcgtttggtcgtgacgcagcgacgtgtgtgt
ggtgtgtccagactacacggacctgtctgtggggacggtgacccagatccaggccatccc
ctacaccgggcccatctccctgctggtcagccagctccgcagcctcaccggtcagtttcc
catcatgcatcagtcccaccagccagctgtgtgtgcgtgcagctggggggaggtcctgaa
tctgtgtgtgtgtgttcaggagacgtggagcaggtggagggagcgtcaaagatcaccatc
cggatcttcaagagcgtcactctggtccacgaggggggcatggtgctcctggagtgggtg
gccaacccgctcaccgacatgtacgctgacgtggtgaccacggtggttctggaggtccag
tccaaccccaacgcccagaaacgtgaggccgccgccgccgccgccgcttggatgagagca
ggcgtgttcgccgagcggctggagctcatgttgcaggacatgtttggagacgactgcgtg
gccttcaaagacggacgcgccagcgtgacggtggacggagccaccgtgtccatccacacg
cagaccagagcggtctgctcagaagacgagtctctgaaggagatggtggaggtggcggtc
cagaggctctacgacgccctcagcccctcc
DBGET
integrated database retrieval system
