Tetraodon nigroviridis (spotted green pufferfish): GSTEN00004057G001
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Entry
GSTEN00004057G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
tng03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSTEN00004057G001
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00004057G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00004057G001
03041 Spliceosome [BR:
tng03041
]
GSTEN00004057G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00004057G001
mRNA degradation factors
5'-3' decay
Lsm complex
GSTEN00004057G001
Spliceosome [BR:
tng03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSTEN00004057G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
dCache_1
Motif
Other DBs
NCBI-ProteinID:
CAF89998
UniProt:
Q4TAT4
LinkDB
All DBs
Position
undetermined
AA seq
99 aa
AA seq
DB search
MSTALESYINRDSGTVAIVTSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVL
GLYIVRGDNVAVIGEIDEETDSTLDLGNIRAEPLNSVVH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccgccctggagagctacattaaccgtgactcagggactgtggccatcgtcacc
tccgacggcaggatgatcgtgggcaccctgaaaggctttgatcagaccatcaacctgatc
ctggatgagagtcatgagcgcgtgttcagctccagccagggggtggagcaggtggtcctg
ggcctgtacatcgtcagaggagacaacgtggcggtgatcggggaaatcgacgaggaaacg
gactccacgctggatttagggaacatcagagccgaaccgctcaactctgtggtccactga
DBGET
integrated database retrieval system
