KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00005149G001
Entry
GSTEN00005149G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K10752  histone-binding protein RBBP4
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03082  ATP-dependent chromatin remodeling
tng03083  Polycomb repressive complex
tng04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    GSTEN00005149G001
   03083 Polycomb repressive complex
    GSTEN00005149G001
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    GSTEN00005149G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tng03036]
    GSTEN00005149G001
Chromosome and associated proteins [BR:tng03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     GSTEN00005149G001
  Histone modification proteins
   HAT complexes
    HATB complex
     GSTEN00005149G001
   HDAC complexes
    Sin3A-HDAC complex
     GSTEN00005149G001
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     GSTEN00005149G001
    PRC2.2
     GSTEN00005149G001
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     GSTEN00005149G001
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    GSTEN00005149G001
  Chromatin remodeling factors
   NuRD complex
    GSTEN00005149G001
   NuRF complex
    GSTEN00005149G001
   NuRF complex (fruit fly)
    GSTEN00005149G001
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 CAF1C_H4-bd WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD_LRWD1 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_IFT140_1st ANAPC4_WD40 eIF2A Beta-prop_SPT8 MIOS_WD40 NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-ProteinID: CAF90748
UniProt: Q4T8N4
LinkDB
Position
undetermined
AA seq 422 aa
MAEKEVYDEGVEDRIINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDIIRIGGDYA
LHRLVLGTHTSDEQNHLVIARVQIPNENAECDNLHFDSEKGEFGGFGSVSGKIEIEIKIN
HEGEVNRARYMPQNSCIIATKTPTSDVLVFDYTKHPPKPDPSGECSPDLRLKGHQKEGYG
LSWNPNLSGNLLSASDDHTVCLWDIGGGPKEGKVLDAKSIFTGHTAVVEDVSWHLLHESL
FGSVADDQKLMIWDTRSNNTSKASHCVDAHSAEVNCLSFNPYSEFILATGSADKTVALWD
LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG
PPELLFIHGGHTAKISDFSWNPVEPWVICSVSEDNIMQVWQMAENIYNDEEADNTPATEL
ES
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggctgaaaaagaagtgtatgacgagggagtggaggataggataatcaacgaggaatac
aaaatttggaagaaaaacacgccttttctgtatgacctggtgatgacccatgccctggag
tggcccagtctgacggcccagtggctcccagacatcatcaggataggaggggactacgct
cttcacaggctggttctaggaacccacacgtcggatgagcagaaccatctcgttattgcc
cgtgtccagataccaaatgagaacgcagagtgtgacaacctacactttgacagcgagaaa
ggagagtttggtggatttggttcggtcagtgggaaaatagagattgagatcaagattaac
catgaaggagaggtgaatcgagcccggtacatgccccagaactcctgcatcatcgccaca
aagacgcccacctcggatgtgctggtgttcgactacaccaagcacccgcccaagccagat
cccagtggcgagtgcagtccggatctgaggctcaagggccaccagaaagaaggatacggc
ctttcctggaaccccaatctcagcggcaacctgctgagcgcctccgatgaccatacagtc
tgcctgtgggacatcggaggggggccaaaagaggggaaggttctggatgccaagtccatc
tttaccggccatactgcggtcgtggaagacgtctcctggcacctgctccacgaatcgctg
ttcggctcagtggccgatgaccagaaactcatgatatgggacactcgctctaacaacacg
tccaaagcgagccattgcgtagacgctcactccgccgaggtcaactgtctgagtttcaat
ccctacagtgagttcattcttgccactggctcagctgataagactgttgcgctgtgggat
ctaaggaacctgaaactcaagctccactcatttgagtcccacaaagatgaaattttccag
gtacaatggtcaccacacaacgagacaatccttgcgtccagtggcactgaccggcgtctc
aacgtctgggatctcagtaaaatcggtgaggagcagtcggcagaggacgccgaggacggc
ccgccagagttattatttattcacggtggccacacagccaagatctccgacttctcctgg
aaccccgttgaaccgtgggttatctgctccgtctccgaggacaacatcatgcaagtctgg
caaatggcagagaacatttacaatgacgaggaagcagacaacacccctgcaacagagctg
gaatcg

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