Tetraodon nigroviridis (spotted green pufferfish): GSTEN00005534G001
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Entry
GSTEN00005534G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K08735
DNA mismatch repair protein MSH2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
GSTEN00005534G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00005534G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
GSTEN00005534G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Ada3
Motif
Other DBs
NCBI-ProteinID:
CAF91023
UniProt:
Q4T7V9
LinkDB
All DBs
Position
undetermined
AA seq
958 aa
AA seq
DB search
MAVQPKQNLSMDSAAETGFVNFLLSMPEKPDTTFRVFDRNDFYTVHGKDAIYAAKEVFKT
NGVIKYLGSGSRRLESVVLSKPNFEALARDLLLVRQYRVEVYKNQNQSKSSKEQDWKLEF
KASPGNLTQFEEVLFGSGSGSEACAGVVAVRVAAGADGQRVVGLGYVDAAQRMMGVCEFP
DNETFSNLESLLVQIGPKECLLVQGEGSAEGSKLREVVQRGGVLVSERKKAEFNSKDLVQ
DLNRLLRTRKGQAASSGTLPELEKQVAVSCLAAAVRFLELLSDESNFGSFSLSSLDLAQY
MRLDNAAVRALNLFQGSPGDAAGTHSLAGLLNKCRTPQGQRLLHQWIKQPLLDTTRIEER
LDLVESLVSDSELRQTCQEDLLRRFPDLHRLSKKLHRQSATLQDCYRVYQAVGHIPALVT
ALDRHAGSHRTLLEAVFAAPLRDLQADFVKYQEMIETTLDMHQVTALWAPCPHAHGRRAV
TVARCLQIEHHEFLIKASFDPVLSELRGKMDQLEKSMQAVLKSAARDLGLEAGKTVKLES
NAALGFYLRVTCKEEKALRNNRKFTMLDVQKNGVRFTSRSVPLSCDPGGCGQLTVCSGSR
RCSKLSSVNEEYSRSRGEYEEAQDAIVKEIINIASGEPRRRRRPRPRLRGSAADAERRHG
GWYAVVSLAVASVSAPVPYVRPRLLAKDQSPRRMQLLQGRHPCMEADADTGLIPNEITFV
QGEKSFYIITGGVIALMAQIGCFVPCEKAELSVIDSILARVGAGDSQSASAASLIIIDEL
GRGTSTYDGFGLAWAISQHVASRIGCFCLFATHFHELTALAAQQPAVHNLHVTALTSQDA
LTMLYRVRPGVCDQSFGIHVAEMAGFPPAVVAMAKEKAEELEEFQEPAGETEQEDGPQAK
RRRRDKQLGEKLIQDFLDQARALPVSTMSDDEVKAELRRLKQELVAKGNEYISDILAR
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcagcccaagcagaacctttccatggactcggcggcggagacgggctttgtc
aactttctcctctccatgccggagaagccggacaccacgttccgcgtgttcgaccgtaac
gacttttacaccgtccacgggaaagacgccatttacgcagcgaaggaggttttcaagacc
aacggagtcatcaagtatctgggctcaggtagccgcaggctggagagcgtggtcctgtcc
aagcccaacttcgaggccttggccagagacctgctgctggtgaggcagtaccgggtggag
gtctacaagaaccagaaccagagcaagagcagcaaggagcaggactggaagctggagttc
aaggcctctcctggaaacctaacccagtttgaggaggttctctttggctccggctccggg
tccgaggcctgcgcaggagtggtggccgtgcgcgtggccgccggggccgacggccagcgc
gtggtcggactcggctacgtggacgccgcgcagaggatgatgggcgtgtgcgagttcccc
gacaacgagaccttctccaacctggagtctctgctggtccagatcggccccaaggagtgt
ctcctggtccagggcgaaggcagcgccgagggcagcaagctgagagaggtggtccagcgt
ggtggcgttttggtctctgagcgcaaaaaagcagagttcaacagcaaagacctggtccag
gacctcaaccggctgctgcggacccggaaaggccaggcggcgtccagcggcacgctgccc
gagctggagaagcaggtggccgtgtcgtgcctggcggcggcggtgcgcttcctggagctg
ctgtcggacgagtccaacttcggctccttcagcctgagctcgctggacctggcccagtac
atgaggctggacaatgccgccgtcagggccctcaacctcttccaggggtctcccggcgac
gccgcagggactcactcgctggctggccttctgaacaagtgccgcacgccgcagggccag
cggctgctgcaccagtggatcaagcagccgctgctggacaccaccaggatagaggagagg
ctggacctggtggagagcttggtgagcgactcggagctcaggcagacgtgtcaggaggac
ctgctgcggcgcttccccgacctccaccgcctgtccaagaagctgcaccgtcagagcgca
acgctgcaggactgctaccgcgtctaccaggctgtgggccacatccccgccctcgtcaca
gctctggacaggcacgcaggaagccaccggacgctgctggaggccgtcttcgccgctccg
ctcagagacctgcaggcggacttcgtcaagtaccaggagatgattgaaaccacgctggac
atgcaccaggtgacggccctctgggccccgtgtccgcacgcgcacggccgacgcgctgta
acggtggcgcgttgccttcagatcgagcaccacgagttcctgatcaaagcctccttcgac
ccggtgttgagtgagctgagagggaagatggaccagctggagaagagcatgcaggcggtg
ctgaagagcgcagccagagacctggggctggaggccgggaagacggtgaagctggagtcc
aacgccgcgctgggcttctacctgagagtcacctgcaaggaggagaaggcgctgaggaac
aacaggaagttcaccatgctggacgtgcagaagaacggcgtgcgcttcaccagcaggtct
gtcccactgtcatgtgaccccggcggttgcggtcagctgacggtctgctctggctcccgc
cggtgcagtaaactgagctcggtgaacgaggagtacagcaggagcaggggcgagtacgag
gaggcgcaggacgccatcgtcaaggagatcatcaacatcgcctcaggtgagccgcgccgc
cgccgtcgcccgcgtccacggttacgtggatccgctgcagacgctgagcgacgtcacggg
gggtggtacgccgtggtgagcctggccgtggcgtccgtgtcggcccccgtgccctacgtc
cgcccccgcctgctggccaaggaccagagccccagacgcatgcagctgctgcagggcagg
cacccgtgcatggaggcagacgcagacacgggcttgatccccaacgagatcaccttcgtc
cagggagagaagagcttctacatcatcacaggtggcgtgatcgccctgatggctcagatc
ggctgctttgtgccgtgcgagaaggcggagctaagtgtgattgacagcatcctggccagg
gtgggggccggggacagccagtccgcctccgccgcctcgctcatcatcatcgacgagctg
ggtcgcggcacctccacctacgacggcttcggcctggcctgggccatcagccagcacgtg
gcctccaggatcggctgcttctgcctgtttgccacgcacttccacgagctgacggcgctg
gcggcgcagcagcccgccgtccacaacctgcacgtgacggcgctgacctcgcaggacgcg
ctcaccatgctctacagggtcagacccggcgtgtgcgaccagagcttcgggatccacgtg
gccgagatggccggcttccccccggcggtggtcgccatggcgaaggagaaggcggaggag
ctggaggagttccaggaacctgcaggagagactgagcaagaggacggcccccaagccaag
agacggcgccgggacaagcagctgggggagaagctgatccaggacttcctggaccaggcc
agggcacttcctgtttccaccatgagtgacgatgaggtgaaggcggagctccgcagattg
aagcaggaactggttgccaagggcaacgagtacatcagcgacatcttggcgcgc
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