Tetraodon nigroviridis (spotted green pufferfish): GSTEN00006687G001
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Entry
GSTEN00006687G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00006687G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tng03021
]
GSTEN00006687G001
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00006687G001
Transcription machinery [BR:
tng03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
GSTEN00006687G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
GSTEN00006687G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
zf-C2H2_4
Hydrolase_3
DNA_pol3_a_NI
zf_C2H2_6
Stc1
Motif
Other DBs
NCBI-ProteinID:
CAF91777
UniProt:
Q4T5Q5
LinkDB
All DBs
Position
7
AA seq
325 aa
AA seq
DB search
MAQHFPESVDPQFAVNLLGNLNQPFQSQSAVPFGHQAPQIAAAENHFGQVDVNDLLSKLI
SNGIIKAAQPEATQTSGTAPAGSPLAEDDEEDDPELLDNDVPDLRSFTIETMKQRFESIV
TKLYSGTQCGLCSMRFSSRQPDLYGDHLDWHYRQNHNGKVPSKKVTHRRWYYGLRDWIEF
EEIADLEERAKSQFFEKENEVEVQKNQAAAKEKEIQCVKATKDQVEELCEICQEQFETYW
VEEEEDWFLKNAIRVDDKSYIDATPSPNKLLTDHPLSSFIKTEDEGEEASCSVDAAVVQK
VESELPDIKTEEVLTDIVQSEQSEA
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcatttcccagagtctgtagatcctcagtttgctgttaaccttttaggaaac
ctcaaccagccgttccagtctcagagtgcagtgccttttggacatcaggctccacagatc
gccgctgcagaaaaccattttggtcaagtggacgtcaacgaccttttgtccaaactcatt
tccaacggcattatcaaagccgcccaaccagaggctactcagacctcaggcactgctcca
gctggttcgcctcttgcagaggatgacgaagaggacgacccagagctgctggacaatgat
gtccctgatctccgtagctttacgattgaaacaatgaaacagcgatttgaaagcattgtg
accaagctgtactcggggacccagtgtggactgtgcagtatgaggttctcatcacggcag
cctgacctgtatggggaccacttggactggcactataggcagaaccacaatgggaaggtt
ccaagcaaaaaagtcacccaccgccgctggtattatggcctcagggactggatagagttt
gaggagatcgctgacctggaggagcgagctaaaagtcagttttttgagaaagagaacgag
gttgaggttcagaagaaccaggctgcagccaaagagaaggagatccagtgtgtgaaggcc
accaaggaccaggttgaagagttgtgtgaaatctgccaagagcagtttgagacctactgg
gtggaggaagaggaggattggttcctgaagaacgccatcagggttgacgataagtcgtac
atcgatgctacgccgtcgcccaacaaactcctcaccgatcatccactgagctccttcatc
aagaccgaagatgagggagaggaggcttcttgctctgtcgacgccgcagtcgtacagaag
gtggagtcggagcttccagatataaaaacggaggaggtattaacagacattgtgcagtcg
gagcaaagcgaagcgtaa
DBGET
integrated database retrieval system
