Tetraodon nigroviridis (spotted green pufferfish): GSTEN00006769G001
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Entry
GSTEN00006769G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
GSTEN00006769G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00006769G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
GSTEN00006769G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-ProteinID:
CAF91834
UniProt:
Q4T5J8
LinkDB
All DBs
Position
18
AA seq
477 aa
AA seq
DB search
DGDSDSDSDDDDDDVRVTIGDIKTGAPQYTAYGAPPVNLNIKTTGSRPYGQATKLKGIDL
DASGNINGVSVVEVDMESFEEKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRLRMGLEV
SSVGSVTSKITVQQGRTGNEKDVSSVPVLTSKPDFSSPVSQYKSAVTQVTRIPPPQWNGT
PVQDMSYYTKSSGTIDVIGGQTATISRVEGRRRHNLDGNNIQVIAEQSDAETPATKIPSF
FPPGPLPPNIPPPPFVPPPPSVSAAPPLIPPPTPPPTGPPPTIIPTMDSGHTGGYDGRSV
PSYTFPQGRILFSSLKTLTGAYPPPMSGGVPPPWPPMMDNSKSWDYYSRREDKRDKDRER
PRERTHEREREREHSPSAISYTSDEERYRYREYQERTYGDRHRDRSSREKEERHRERRHR
DKEEGRHKSSRSSSRRRHDSEEGDNHRRHKHKKSKRSKEGKETSEDNNADQENQDAM
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gatggcgacagtgacagcgacagtgatgatgacgatgatgatgtccgcgttacgattgga
gacatcaaaactggggctccacagtatacggcttatggagcaccaccagtcaacctcaat
attaagacaacaggctccagaccgtatggacaagctaccaagctcaagggcatcgatcta
gatgcctcaggaaacattaatggggtttctgtagtggaagtggacatggagtcttttgaa
gagaagccctggaggaagccaggagcggatctctctgattactttaactatggctttaat
gaagacacatggaaggcatattgcgaaaagcagaagaggctgcgaatgggacttgaggtc
tcttcagtcggctcagtgaccagcaagatcactgttcaacaaggaagaacaggcaatgag
aaggatgtttccagtgtaccagttctcacgtcaaaaccagacttctcatctccagttagc
cagtacaagtctgcagtcacgcaggtcaccaggattcctccccctcagtggaatggcaca
cctgttcaagacatgtcgtattatacgaagtcaagcggtactattgatgtgataggtggg
cagacagccactattagccgcgtcgaaggtcgacggagacacaatctagatggcaacaac
atccaggtgatcgctgagcagtcagatgctgagacacctgcaacaaagatcccctccttc
tttcctcctggaccactccctccaaacataccaccacctccatttgtccctcccccaccc
agcgtcagtgcagcacccccactcattccgccacccacccctccacccactggacctcct
cctactatcatccccaccatggacagtggccacactggagggtatgacggtcgctccgtt
ccatcctacacatttcctcaaggtagaattcttttttccagcttaaaaacattgacaggc
gcttaccctccccccatgagcgggggtgtgcctcctccttggcctcctatgatggacaac
tctaaatcctgggactactattctcgtcgagaagacaagagggacaaagacagagaaaga
cccagagagaggacacatgagcgcgagagagagagggagcacagtccttcagctattagc
tacaccagtgacgaagaacggtatcgctatcgcgagtaccaggagcggacttatggcgac
cgccaccgcgaccgatccagccgcgagaaagaggaaagacaccgagagaggcggcaccgg
gacaaagaggagggacgacacaagtcctcccgcagcagcagcaggaggagacacgacagc
gaggagggcgacaaccaccgaaggcacaaacacaagaagagcaagaggagcaaggaaggc
aaagagaccagtgaggacaacaatgcagaccaggagaaccaggatgccatg
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