Tetraodon nigroviridis (spotted green pufferfish): GSTEN00007878G001
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Entry
GSTEN00007878G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tng03000
]
GSTEN00007878G001
Transcription factors [BR:
tng03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
GSTEN00007878G001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sox_N
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-ProteinID:
CAF92578
LinkDB
All DBs
Position
18
AA seq
502 aa
AA seq
DB search
MSGEEHSLSEAEMSPGGSDDGHSLSPSQPGGPPSQGSPLSVTPQQLSALCVGDGSGDDGG
RSGAKSEEEDDRFPIGIREAVSQVLDGYDWTLVPMPVRVNNGNKAKPHVKRPMNAFMVWA
QAARRKLADQYPHLHNAELSKTLGKLWRLLNETDKRPFIEEAERLRKQHKKDYPDYKYQP
RRRKNGKLMPASESDGQGEGEASHSQSHYKTLHLEHNGGAGSPLDDLHHHHHHHHHHHHP
AGQSHSPPTPPTTPKTELQSGKLSDPKRDGAAVAAGGSGGSRGALGVGADGTSSGPSSSN
TKPHIDFGTMDIGEISHEVMSNIEPFDVNEFDQYLPPNGHPQSATVASAAGSSTSSYAYA
LAAASGHSAWLSKQQQPQASPSSTDPSKAQIKSESASGSHYAEASSSPSSGTHVTYTPLS
LPHYGSAFPSLASRAQFDYGDHQTPGAYYAHSSQAPGLYSAFSYMGPTQRPLYTTIGDPS
TVGPSHSPTHWEQPVYTTLTRP
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtgaggagcacagcctgtccgaagccgaaatgagtcccggcgggtcagatgac
ggtcactccctgtccccgagccagcccggggggccccccagccagggctcccctctgagc
gtcacgccgcagcagctgagcgcgctgtgcgtcggggacggcagcggggacgacggaggc
cgatccggagctaaatcggaggaagaggacgatcgcttcccgatcgggatcagagaggcg
gtcagccaggtgctggacgggtacgactggacgttggtgccgatgccagtgcgcgtaaac
aacggaaacaaggcgaagccgcatgtgaagaggccgatgaacgccttcatggtgtgggcg
caggcggccaggaggaaactggccgaccagtacccgcacctgcacaacgcggagctcagc
aagacgctgggcaaactgtggaggttattaaacgagaccgacaagaggccattcatcgag
gaggcggaaagactgaggaaacagcataaaaaggactacccagactacaagtaccagccc
cggagacgcaagaatggcaaacttatgcctgcaagtgagtccgacggtcagggggaagga
gaagccagccactcccagtcacactacaaaaccctgcatctggagcacaacggtggcgct
ggatctcctctggatgacctgcaccaccaccaccaccaccaccatcaccaccaccatcct
gctggtcagagccacagtccaccgacgcctccaaccacacctaagactgagctccagtct
ggaaaactatcagatcccaagagggatggtgcagcagtagcagctggggggtcaggaggg
tccaggggggcccttggggtcggagctgatgggacatctagtggaccgtcgtcatcaaat
accaaacctcacatcgactttggcaccatggatatcggggagatcagccacgaggtgatg
tccaacatcgaaccgtttgacgttaatgagtttgaccagtaccttcctccaaatggccac
ccgcagagcgccactgtggcttcggcagctggctcttccacctcgtcttacgcctacgct
ctcgccgctgccagcggtcactctgcgtggctctccaaacagcagcagcctcaagcttct
ccatcctccaccgacccctccaaagcacagatcaagagtgagtccgcatctggcagtcac
tatgccgaggcctcgtcctctccctcctcaggcacccacgtcacctacactcctctcagc
cttcctcattacggctctgctttcccctcgctggcctccagggctcagtttgattacgga
gaccatcagacccctggagcgtattatgcccactccagccaggccccggggctttactca
gccttctcttacatgggccctacacagaggcccctgtacacgaccattggggacccctcc
accgtgggtccctctcacagccctacccactgggagcagcctgtttacaccacacttaca
agaccttga
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