Tetraodon nigroviridis (spotted green pufferfish): GSTEN00008286G001
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Entry
GSTEN00008286G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14829
pre-rRNA-processing protein IPI3
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tng03009
]
GSTEN00008286G001
Ribosome biogenesis [BR:
tng03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
GSTEN00008286G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_alt
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
WDR55
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR75_2nd
Beta-prop_Vps41
Beta-prop_NWD2_C
Beta-prop_Nup120_160
Beta-prop_VPS8
Ge1_WD40
WDR54
Beta-prop_DCAF12
Beta-prop_RIG_1st
KNTC1_N
Pvc16_N
Motif
Other DBs
NCBI-ProteinID:
CAF92868
UniProt:
Q4T2L4
LinkDB
All DBs
Position
undetermined
AA seq
432 aa
AA seq
DB search
MAAPLEVILSSDSSSQLWNLTVFDLHSGSSLLSYRGGNSSARTLTLLRGQYLLSAQLGKN
FINVWEIQRKDQLQQKIVCPGVVTCLNASPDGLFLAAAVAEAVYVWEVSTGKLLSVLSRH
YQDVTCLKFTDDSSHFVSAGKDNLALVWNLSSVIQVDLNHTPEPRHVLSRHSLPITDLHC
GMMGVQARVMTASLDQTVKVWELSSGELLLSILFDVEIMSVTSDPCEYFLFCGGSDGNIF
QVSLCSQGLSRDRPFQSDAEQNQNQIFRGHTNMVSCVSVSMDGTLLLSGSHDETVRVWDI
QSRQTIRCLTHKGPVTNAVVTAAPANMFLPDSRPAVPLPRFSRHLSSSEGDGSEAGEVCV
RLGLNTQQEEESYLRTSQRLSSLMNAVTDKSVFGDGENTKMRVAELEDEVHTLKKINKDL
YEFSSQLLTKPT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccacttgaggtgattctgagctcagattctagttctcagttgtggaacctg
accgtgttcgacctccacagtggttccagcctcctgtcatacaggggagggaacagttcg
gcccggactctcacccttctccgcggacagtacctcctgtccgctcagctgggcaagaat
ttcattaacgtgtgggagatccagagaaaggatcagctacagcagaagatagtgtgccca
ggtgtggttacctgtctaaacgcctcacctgatggactgtttctggctgctgctgttgct
gaggccgtttatgtgtgggaggtgtccacaggtaaactgctgtctgtgctcagtcgtcac
tatcaggacgtcacctgcctgaagttcacagacgacagcagccattttgtttctgcagga
aaagacaacctggctctggtgtggaatctgtccagtgtgattcaggtggatttaaaccac
acccctgagccacggcacgtcctgtctcgtcactctctaccaatcacagacctgcactgc
ggcatgatgggagtccaggccagagttatgaccgcctctctggaccagacggtcaaggtg
tgggagttgtcctctggcgagctgctcctgtctattttgtttgatgtggagatcatgtct
gtgacctctgacccctgcgagtacttcctattttgtggaggaagcgatgggaacattttc
caagtgtctctctgcagtcagggtctcagtcgggacagaccgtttcagtcggacgccgag
cagaaccagaaccagatcttcagaggacacacgaacatggtctcttgtgtctccgtgtcc
atggacgggaccctcctcctgtcggggtcacatgatgagacggttcgtgtgtgggacatc
cagagcagacaaaccatccgctgcctcacccacaaaggcccagtcaccaatgccgtcgtc
acagctgctccagccaacatgttcctgcctgacagccgcccggccgtcccgctgccacgt
ttcagccgccacctgagctcctcggagggggatggcagcgaggcgggggaggtgtgtgtc
cgcctgggtctcaacacacagcaggaggaggagtcgtacctgcggacgtcgcagcggctg
agctccctgatgaatgccgtgacagacaagtccgtcttcggtgatggggaaaacacaaaa
atgcgagtggccgaactggaagatgaggttcacacactgaagaaaatcaacaaagatctc
tacgagttttccagtcagctgctcaccaaacccacg
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