Tetraodon nigroviridis (spotted green pufferfish): GSTEN00008589G001
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Entry
GSTEN00008589G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03020
RNA polymerase
tng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GSTEN00008589G001
09124 Replication and repair
03420 Nucleotide excision repair
GSTEN00008589G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tng03021
]
GSTEN00008589G001
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00008589G001
Enzymes [BR:
tng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GSTEN00008589G001
Transcription machinery [BR:
tng03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
GSTEN00008589G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
GSTEN00008589G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-ProteinID:
CAF93098
UniProt:
Q4T1Y4
LinkDB
All DBs
Position
undetermined
AA seq
1217 aa
AA seq
DB search
LFCSSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLK
FEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKEGEDQIQTQHQKT
FIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYV
FAKKDSKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEV
PIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAK
PGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH
YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYS
LATGNWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWG
MVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKI
FVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLI
VEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGV
AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTL
AHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR
SVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGEDVII
GKTVTLPENEDELDGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVSRRH
LHLTRLRSSPGFKPSRMLSHSCSLQVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT
CEGITPDIIINPHAIPSRMTVGHLIECLQGKVWTSTSTLHLPELHCSVPLILVAANTGWA
VLYQLFPVSFQVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKL
TSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAH
GAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKL
LFQELMSMSIAPRMMTS
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
ttattttgtagctcttattttgatgagaagggtttggtccgacagcaactggattcgttt
gatgagttcatccagatgtctgttcagaggatcgttgaagatgcgccacccattgacctg
caggcagaagctcagcacacttcaggagaggtggaggaaccgccccgttatctgctgaag
tttgagcagatctacctgtccaaacccacccactgggagagagacggagctccgtccccc
atgatgcccaatgaagcccgactgcgaaacctcacgtactcggctcccctgtatgttgac
atcacaaagacgatcattaaggagggggaggaccagattcagacgcagcatcagaaaacc
ttcattggtaaaatccccatcatgcttcgctccacctactgcctcctgagtggcctgaca
gaccgagacctttgtgagcttaacgagtgtccgcttgaccctgggggctatttcatcatc
aatggctctgagaaggtgctcattgcccaggaaaagatggctaccaacacagtgtacgtc
tttgccaaaaaggactccaaatatgcctacaccagtgagtgtcgttcctgtttggagaac
tcctcccgtcccaccagcaccatctgggtcagcatgatggcccgaggaggacagggagta
aaaaagagtgcaattggtcaaaggatcgtgtccacgctgccctacatcagacaggaggtt
cccattatcatcgtgtttcgagcactgggctttgtgtctgacagagacatcctggaacac
atcatctatgactttgatgaccctgagatgatggaaatggtgaagccatccctagatgaa
gcgtttgtaattcaagaacaaaacgtggcattgaactttattggttccagaggagccaaa
ccaggtgtgacaaaagaacgaaggatcaagtatgccaaagaggttctgcagaaggagatg
ctgccacacgtgggagtcagtgatttctgcgagaccaaaaaggcttatttcctagggtac
atggtccacaggttgctgctggctgctctgggcagacgggagctggacgacagagatcac
tatggcaacaagaggctggacctggcagggcccctgttggccttcttgttcagaggcatg
ttcaagaatcttctgaaggagatccgaatttatgcacagaagttcatcgacagaggcaaa
gacttcaatctggagctggccattaaaaccagaatcatctcggacggcctgaagtactct
ctggctactggaaactggggagatgtgaaaaaagctcatcaggccagagccggagtgtct
caggtgttgaaccgtctcaccttcgcctccactctttctcacctgcggcgtgtcaactct
cccatcggtcgagatggaaaactggccaagcccagacagttgcacaacacgctgtgggga
atggtgtgtcccgctgaaacccctgagggccacgctgtgggcctggtgaagaacctggct
ctcatggcctacatctctgtgggctcccagccctcacccatcctggagttcctggaggag
tggagtatggagaatctggaggagatctctcctgcagccatcgcagatgccacaaagatc
tttgtgaatggatgctgggttggaattcacaaggaccctgagcagttgatgaacaccttg
aggaagctccgtagacagatggacatcattgtgtcggaggtctccatgatcagagacatc
agagagcgggagatcaggatctacacagacgcaggacgaatctgtcgaccgctcctgatc
gttgagaagcagaaactgctgctcaagagacgacacattgatcagttaaaggagagggag
tacaacaattacagctggcaggacttggtggcaagtggtgtggtggagtacatcgacacc
ttggaggaggagacggtcatgcttgccatgactcctgatgacctacaggaaaagggcgtg
gcttactgctccacctacacccactgtgagatccacccatccatgatcctgggagtttgt
gcttccatcattccgttccctgaccacaaccagtcccccaggaacacctaccagtctgct
atgggcaagcaggccatgggggtctacatcaccaacttccatgtcaggatggacacgttg
gctcatgtgttgtactaccctcagaaacctctggtcaccacgaggtccatggagtacctg
cgcttcagagagctgcccgcagggatcaactccatcgtggcaatcgcctcgtacacaggt
tacaaccaggaggactcggtgatcatgaaccgctccgcagtggacagaggcttcttcagg
tctgttttctaccgatcctacaaggagcaagagtcaaagaaaggttttgatcaggaggag
atctttgagaagccaacccgcgagacctgccaaggtatgcggcacgccatctacgagaaa
ctggatgacgacgggctgatcgctcctggcgttcgtgtttctggtgaggacgtgatcatt
gggaagacggtgacgctgccggagaatgaagatgagctggatggcaccaaccggcgctac
accaaaagggactgtagcacctttctaagaaccagcgagactggaatcgtggatcaggtg
atggtgacgctcaaccaggagggctacaagttctgtaagatcagggtgagcagacggcat
ctccacctgacacgcctgaggagctccccagggttcaaacccagcaggatgctcagccac
tcctgttccctgcaggtccgctccgtccggatcccccaaattggagacaagtttgccagc
cgacacggacaaaaagggacctgtggcatccagtacagacaggaggacatgccgtttacc
tgtgaaggaataactcctgatatcatcatcaatccacatgccattccatccaggatgacg
gtgggccatctgatagagtgtctgcagggcaaggtttggaccagtacttcaaccctccac
cttccagagctccactgctccgttcctttgattttggtcgctgctaacacaggttgggct
gttttatatcaactctttcctgtttccttccaggtgtcagcaaataaaggtgaaattgga
gacgccacgccctttaatgatgctgtcaatgtgcagaaagtgtccaacctgctgtcagaa
tatggataccacctaagaggaaatgaggtcctctataatggcttcacggggaggaagctc
acttctcagatcttcatcggtccaacctactaccagcgcctcaaacacatggtggacgac
aagattcattcgagggcccggggccccgtccagatcctcaaccgccagcccatggaggga
cgatcacgggacggtggtctgcgtttcggggagatggagcgtgactgtcaaatcgctcac
ggcgctgctcagttcctcaaggagcgtctgtttgaagcctcggatccgtaccaggtgcac
gtttgcaacctgtgtggactgatggccatcgccaacacgcggacgcacacgtacgagtgc
cgcggctgccgcaacaaaacccagatctcgctggttcggatgccctacgcctgcaagctt
ctcttccaggagctcatgtccatgagcatcgctcctcgcatgatgacatcg
DBGET
integrated database retrieval system
