Tetraodon nigroviridis (spotted green pufferfish): GSTEN00010338G001
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Entry
GSTEN00010338G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00010338G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00010338G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00010338G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00010338G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-ProteinID:
CAF94313
UniProt:
Q4SYG9
LinkDB
All DBs
Position
undetermined
AA seq
987 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVGEGVEQFEDIWQKLHNAANTNQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRNLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNMIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKKFIEKHRYHI
RMLETILRMLDNDTLQVEAIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPQTLVA
TSPPGHSHLEDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQVG
QRFDQLLRLIKRRKKGDSRKYGNETIFLLFQSPVKNGNPSSSLSSSSSSSSSSSSSSSVS
GLPPSSLVSTATMAGGGNSGTSGSNSHHGPSGGLLSNASAGSYSNATQQPPHPSAQQQQQ
AKNLVSSAPSASISNSIASVNSHPACSASSPPNASTLLTSSSQTQLLSGPPPTSNSLSLG
LSLGKGGISCSVTTSPMSGSLGLSGMQASLNTMASLLSNSTPAPYAQAAAVGAVGSGLPG
SLGGIITTTASNSTLGSIGSGSATVGGPTSSSGGLLGSVSGVNSMASGILGLTSAPAGMQ
ASSLVSLSPVGSLAPGSNVGVIGSNSSSSASAGGSLSLSIRPPSQQKQTSSTTQQYSALN
STSQSQISQSLSLTSTANQQKDSGPSLLSSLSLSSSSPSPAFYSEAKTASSGGLLNGPLS
YSQSSDIIKPPCLSSSASRASEQPEVHGRAGSAQLRDGWRRALPAPQLRHLHQQTLRPPQ
APRSAPSGPCCRRSASLRSLGVCPLGPVPLSKDQLSQQAMGEAACTHIPPPSDSERIRQY
LMRNPCPTLPFHHQVPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWR
FHTKYMMWFQRHEEPKTITDEFEQVSRRGAFPEPSQSMLGTAAGASLTSCSSLSQGTYVY
FDYEKWGQRKREDFTFEYRYLEDRDLQ
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtaggggaa
ggagtggaacagtttgaagacatttggcagaagcttcacaatgcagcaaacaccaaccag
aaggagaaatatgaagcagacctcaagaaggagattaaaaagctgcagcgtctccgagac
cagatcaagacgtgggtggcatccaacgagatcaaagacaagaggaacttggtggacaac
cgtaaactcatagaaacgcaaatggagcgattcaaaatcgtggagagggaaacaaagaca
aaggcgtactcaaaagaggggttgggtctggctcagaaggtggaccccgcccagaaagag
aaggaggaggtcggcacgtggctaacgaacatgatcgacacgttgaacatgcaggtggac
cagtttgagagcgaggtggagtccctttcagtccagacgagaaagaagaaaggagataag
gacaagcaggatcggatcgaggagctgaagaagttcattgagaaacaccggtaccacatc
cggatgttggagaccattctgaggatgctggacaacgatacgctgcaggtggaggccatc
aggaaaatcaaggatgatgtggaatattacatagactcttcacaggatccagactttgag
gagaacgagtttctgtacgacgacctggacctggaagacatcccccagacgctggtggcc
acctcccccccgggacactcgcacttggaggacgagatcttccagcactccagcagcaca
cccacctccaccacttcatcctcccccatccctccctcgcctgccacttgcactacggag
aactcggaggatgacaagaagagaggtcgctcaacagacagtgaagtcagtcaggttggt
cagcggtttgatcagttgctccgcctgatcaaacgaagaaaaaagggtgactccagaaaa
tatggtaacgaaaccatctttctactttttcagtcaccggtgaagaatggaaacccctcg
tcctcgctgtcctcttcctcctcgtcttcctcctcgtcctcatcttcttcctcggtttcg
ggactgcccccatcctccctggtctctacggcgaccatggccggtggaggcaacagcggg
acctccgggagcaacagtcaccacggcccctcgggggggctcctttctaacgcctctgcg
ggcagctacagcaacgccacccagcagccgccccacccgtcagcccagcagcagcagcag
gccaaaaacctggtcagctccgccccctcggcgtccatctccaactccatcgcctcagtc
aacagccacccggcctgctcggcctcgtccccccccaacgctagcacactcttgacttcc
agcagccagacacagctcctgtcagggcctccgcctacctccaacagcctcagcctgggc
ctctcgctgggcaaaggagggatctcgtgctccgtcaccaccagccccatgtctggcagc
ctgggcctgtcggggatgcaggcatccctaaacaccatggccagcctcctgtccaactcc
accccggcgccgtacgctcaggcggctgctgtgggtgcggttggatccggcctaccgggc
tccctgggcggcatcatcaccaccactgcgtccaacagcactttaggctccatcggaagc
gggagcgccaccgtcggcgggccgacgtcctcgtccgggggtctgctgggctcggtgtcg
ggggtgaacagcatggcctcggggatcctggggctgacctctgctccggcggggatgcag
gcctcctcactggtgtccctgagtccggtgggcagcctggcgccaggcagcaacgtgggc
gtcatcgggagcaacagcagcagctcggcatccgcaggaggaagcttgtcgctctccatc
aggccgccgagccaacagaagcagaccagtagcaccacgcagcagtactccgccctcaac
agtaccagccaatcacaaatcagccagtccttgtccctgacctctacagccaatcagcag
aaagacagcggtccaagtttgctgagctccctgagtttgtcgtccagctccccgtcacca
gccttctacagcgaggcgaaaaccgccagcagcggcggtctgctgaacgggccgctgtcc
tactcgcagtcctctgacatcatcaagcctccttgtctgtcctcatcagcctccagagcc
tctgagcagcctgaagtccatggcagagcgggcagcgctcagctcagggatggatggaga
cgtgccctccctgcacctcagctcagacatcttcaccagcagacactacggccccctcag
gcccctcgttcggcgccctcaggcccctgctgtcggaggtcagcatccctccgatcgctg
ggcgtctgccccctggggcccgtccccctgtccaaagaccagctctcccagcaggccatg
ggggaggcggcgtgtacgcacataccccccccctctgactcggagaggatcaggcagtac
ctgatgaggaacccctgccccaccctgcctttccaccaccaggtgcccccgcctcactcg
gacaccgtggagttctaccagcggctgtccacggaaacgctcttcttcatcttttactac
ctggagggcaccaaggcccagtacctggcagccaaagccctgaagaagcagtcctggagg
ttccacaccaagtacatgatgtggttccagaggcacgaagagcccaaaaccatcacggac
gagtttgagcaggtcagccgccgcggagccttcccagagccttcccagagcatgctggga
acggctgcaggagcctccctgaccagctgctcctctctctctcagggaacatacgtttac
tttgactacgagaaatggggccagcgcaagagggaagacttcacctttgagtacaggtac
ctggaagaccgagacctccag
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