Tetraodon nigroviridis (spotted green pufferfish): GSTEN00012388G001
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Entry
GSTEN00012388G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K19527
vacuolar protein sorting-associated protein 13D
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tng04131
]
GSTEN00012388G001
Membrane trafficking [BR:
tng04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
GSTEN00012388G001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_VAB
Motif
Other DBs
NCBI-ProteinID:
CAF95655
LinkDB
All DBs
Position
undetermined
AA seq
1334 aa
AA seq
DB search
QPAKRDSCSSKQIYRQPGHTIYLLPTVVLANLLPCDLNFYIKGSSIKGSLKPGKEAVLHA
ADTSQNMELGVLLENFPVCKELLIPPGTQNYVVRMRLYDTNKHLLCLTIRIILRAQGALK
ILISAPYWLVNKTGLPLIFRQDNAKADAAGQFEEHELARSLSPLLFCYTDKEQPAMCTMR
IGKGIHPDGVPGWCQGFSLDGGSGVRAVKVIQPGNRPGLIYNIGKPVRKGKGRYRDTHIV
TFAPRYLLDNRSTHKLAFAQREFARGKGTANPEGYISTLPGSSVVFHWPRNDYDQLLCVR
LMDTPNCTWSGGFEVNILKSFHVNMRWEKLFSHPRGRCRQGRGRKAVFHRLTTAFITGAF
VGLFVLTRDTLGNCFFLRTEITLKGATYQISFTDADQLPPPFRIDNMSEVGFCDGPSGVH
RGVLRSQHRPLSVFVPTPQVPIQFWQQAVADMRLRTEVKAGCVLDYACDEPTLPPHLTLT
AKGAGSSEVTADMNFFREYNKLYYENFIYIAATHTFSGTVERRPVGKKPLVSCAELVLDV
DTKTQRVILKKKEPGKRSQLWRMTGSGMLCHEGSSPPQNKPAQPRPLDSSLVLDIAGLAA
VTDNSFEPLKLRRPDPRRSTTQTWYFNSGMLTCGLPRLVVQAKGGVEGLYDGAEVVLGPD
SGLLEAGPEQQFINQKMRPGSGVLSVQVLPDGPTRVLQISDFYQRRMIQSSPSMEQNRSK
AEEKEPDCEQELEVLVNLEEGVGVSLVNKVPEELVFTMLSGIRVHFTRTAAHEVLELSVQ
SIQVDNQLLGTTQPVILCVTPSSGEGSVSDSGPALQVNAVKVPSRLMLTELFKHLMVTAR
RFTVIVEEKLLLKLLSFFGYGQTEAELEKVGENLHEKSNEDAGPPKRYYFENLKISLPQV
KLSVFTSHKLPPDLKALKGTLGFPLIRFEDAVINMYPFTRVHPYETQEIILNDILKHFRE
ELISQAAQILGSVDFLGNPMGLLNDVSEGVSELIKYGNVGGLIRSVTHGVSNSAAKFAGT
LSDGLGKTMDNRHQSEREYIRYHGATSGEHLVAGIHGLAHGIIGGMTSIITSTVEGVKTE
GGVSGFISGLGKGLVGTVTKPVAGALDFASETAQTVRDMASLSNHRLSVQRVRKPRCCKG
PQGLLPRYSAAQADGQEQLFHLTDNIHSEFFIAVEPIDSYCVLISSIAVYFLKPGDYVDR
DAIFLEVKYDDLYHCLVSRDHGRVYVQLTKKAESSGSGVAIPGPSHQKPMVRDPHGSSQM
SICISNQVTRTNRLTGRIRAALLTVLSSGPREERKPGRQNLPRSQLRQESVLRAAADAAG
QRERGLFAAGLLIM
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
cagcctgccaaaagggattcttgcagttccaagcagatatatcggcagccaggccacacc
atctacctgctgcccaccgtggtgctggccaaccttctgccctgtgacctcaacttctat
atcaaaggatcgtccattaaggggtcactgaagccgggcaaggaggccgttcttcacgct
gctgacacctctcagaacatggagctgggagtcctgctggagaactttccggtgtgtaag
gagctgctcatcccacccgggacccagaactacgtggtccgaatgaggctctacgacacc
aacaagcacctgctttgcctgaccatccgcatcatcttgcgggcacagggggcgctaaag
atcctgatatctgctccctactggctggtcaacaagaccggtttgcccttgattttccgg
caggacaatgcaaaagcagatgcagcgggccagtttgaggagcacgagctggccagaagt
ctgagtccgttactgttctgctacaccgacaaagagcagcctgcgatgtgtaccatgaga
attggaaaaggcatccacccggatggagttccaggttggtgtcagggcttctccctggat
ggagggagtggagtcagagcagtgaaggtgattcagcctggaaacagacccggcctcatc
tacaatataggcaagcccgttcgcaaaggcaaaggtcgctacagagacacccacattgtg
acatttgctccccgctacctgctggacaacagatccactcacaaattagcttttgctcag
agagagtttgcgagagggaagggcacggccaacccggagggctacatctccaccctgcca
ggctccagcgtggtcttccactggccccgtaacgactacgaccagctgctgtgcgtccgg
ctcatggacacacccaactgcacctggtctggaggcttcgaggtcaacatcctcaagtct
tttcacgtcaacatgaggtgggagaagcttttcagccaccccagagggcggtgcagacag
ggccggggccggaaggctgttttccaccgactgacgactgcgttcatcactggggctttt
gttggtttgtttgttttaaccagggacactttagggaactgcttcttcctgcggacagaa
atcaccctgaaaggagccacctaccagatctccttcacggacgccgaccagctcccgcca
cctttccgcatcgacaacatgtctgaagtaggtttctgtgacggcccctccggcgttcac
cgcggcgtgctgaggtcccagcaccgacctctttctgtgtttgttcccacccctcaggtg
cccatccagttctggcagcaggcagttgctgacatgcggctgcgcaccgaggtgaaagcc
ggctgcgtgctggactacgcctgcgacgagcccacgctgccgccccacctcacgctcacc
gccaagggcgctgggtcttcagaggtcacagctgacatgaacttcttcagagaatacaac
aagctctactatgagaacttcatctacatcgcagccacgcacaccttctcagggactgtg
gagagaaggcccgttgggaagaagcctctggtgagctgtgctgaactggttctggacgtg
gacaccaaaacgcagagggtcatcttgaaaaaaaaggagccggggaagcgctcccagctg
tggaggatgacgggctctgggatgctgtgtcacgaaggctcgtctccacctcagaacaaa
ccggcgcagcctcgtccgctggactcttccctggtgctggacatcgccgggctggcggcc
gttactgacaacagttttgagccattgaagctgaggaggccggaccctcggcgcagcacc
acgcagacgtggtacttcaactcgggcatgctcacctgtgggcttccccgcctggtggta
caggccaagggcggcgtggagggactgtacgacggcgcagaggtggtgctgggacccgac
tctggcctgttggaagcaggccctgagcagcagttcatcaaccagaagatgagacctggc
tctggggtgctgtctgtgcaggtccttccagatggacccactcgtgtcctgcagataagc
gacttttatcagaggagaatgatccagagctctcccagcatggagcagaacaggagcaaa
gcggaggagaaggagccagactgtgagcaggagctggaggttctggtgaacctggaggaa
ggtgtgggggtctcgctggtgaacaaggttcctgaggagctcgtgttcacgatgctgtct
ggaatacgtgttcatttcacgcgcacggccgctcatgaggtgctggagctgagcgtccag
agcatccaggtggacaaccagctgctgggcaccacccagccggtgattctatgtgtgacg
cccagctccggcgagggcagtgtcagcgacagtggccccgccctccaggtcaatgccgtc
aaggttcccagcagactcatgctcacggagctctttaagcacctcatggtgacagctcga
cgcttcacagtcatcgtagaagagaagctgctgctcaagctgctcagcttcttcggatat
ggacagacagaagccgagctggagaaggtgggagaaaaccttcacgagaagtccaacgag
gatgcaggaccccccaaacgatactactttgagaacctgaagatcagcctccctcaggtc
aagctgagcgtcttcacctcccacaagctgccccctgacctcaaggccctgaaaggaacc
ctggggttccctctgattcgatttgaagacgctgtcatcaacatgtacccgttcaccagg
gtgcacccgtacgagacgcaggagatcatcctcaacgacatcctcaagcatttccgagag
gagctgatcagccaggcggcccagatcctgggctccgtggacttcctggggaaccccatg
ggcctcctcaacgacgtcagcgaaggcgtgtccgagctgataaagtacggcaatgtgggc
ggcctcattcgcagcgtgactcatggcgtgtccaactctgcagccaagtttgcaggaacg
ttgtcagacgggctcggaaaaacgatggacaaccgacaccagagcgagcgggagtacatc
cgctaccacggagccaccagcggggaacacctggtggctgggatccacggcttagctcac
ggcatcatcggaggcatgaccagcatcatcacctccaccgtagagggggtgaagacggag
ggcggggtcagcggcttcatctcgggcctgggcaaaggtctggtcggcacggtgaccaag
ccggtggctggagctctggactttgcctcggaaacggcccaaaccgtccgggacatggcc
agcctcagcaaccacaggctgagcgtgcagcgcgtcaggaagccccgctgctgtaaagga
ccccagggtctccttcctcgctactcagccgctcaagccgacggccaggagcagctcttc
cacctcaccgacaacatccactccgagttcttcatcgccgtggagcccatcgacagctac
tgcgtgctcatctcctccatagcggtctacttcctgaagccaggggactacgtggaccgc
gacgccatcttcctggaggtgaagtacgatgacctctaccactgcctggtctccagggac
cacgggagggtttatgtgcagctcaccaagaaggccgagagcagcggcagcggcgtggcc
attcctggcccctcccaccagaaacccatggtgagggacccgcacggatcctctcagatg
tcaatttgcatttctaaccaagtaactagaacaaatagactgactggaaggatcagggca
gctcttttgaccgttctctcctcaggtccacgtgaagaacgaaagcctggccgccaaaat
ctcccaagaagtcaactacgccaagagtctgtactacgagcagcagctgatgctgccggc
cagcgagaacgaggactgtttgctgctggactcctgatcatgtga
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