Tetraodon nigroviridis (spotted green pufferfish): GSTEN00012441G001
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Entry
GSTEN00012441G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03022
Basal transcription factors
tng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GSTEN00012441G001
09124 Replication and repair
03420 Nucleotide excision repair
GSTEN00012441G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tng03021
]
GSTEN00012441G001
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00012441G001
Transcription machinery [BR:
tng03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GSTEN00012441G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GSTEN00012441G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-ProteinID:
CAF95693
UniProt:
Q4SUI9
LinkDB
All DBs
Position
13
AA seq
596 aa
AA seq
DB search
MASLSEEVLLVVKKVRQRKQDGTLYLMAERIAWSPEGKDRFTVSHLYADIRCECIKEATQ
RRRWLFSHERNALLRAGQKISPDGKAKIQLQLVLHTGESTTFHFSNESSALKDRDTAKEL
LQQLLPKFKKKANKELEEKNRMLQEDPVLFQLYKDLVVSQVISADEFWANHLGDMKNDSA
PYNNKQDVGISGAFLADIRPQTDGCNGLRYNLTADIIESIFRTYPAVKQKYSENVPHNMT
EKEFWTRFFQSHYFHRDRISTGAQDIFSECAKQDEKGLKSMVEQGVRNPLVDLLSLEDKT
LDEVGFEEDLTLPRQQRASVVDVLCFCCVLLQGYGVNASLPAASTSNRTVKESSNAAIIK
RFNHHSAMVLAAGSQTREKTTGQANETSSTNGSSRDSDVFQLPVKKAKLQEATEYEDLQR
ENKPKTIALNLKKSDRYAHGPVPLQSQHYTTSQDIINSVSCIQHEMANYKPNLTQVLSST
AASSAIAALSPGGVLMQAATQQTVNQMVPSDVQGELKHLYAAAGELLRHFWSCFPVNTPF
LEEKASDKDEIKPRKVSDDQDFSFQGEDSASVLEYKCKFVIGRLMRRRDWRQVAFA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgttatcagaagaagtgttgctggtggtgaagaaagtccgacagagaaaacag
gatggaaccctctatttgatggctgaacgcattgcctggagtccagagggaaaagaccgt
tttaccgtcagccacctgtatgcagacattcgctgtgagtgcataaaagaagcaacacaa
agaaggagatggctgttctctcacgaaagaaatgctctcctccgtgcaggtcagaagatc
agcccagatggtaaagccaagatccagcttcagcttgtcctccacaccggagagagcacc
acattccatttttctaatgagagcagtgcgctgaaagacagagacactgccaaagaactg
ctgcagcagctgttgcccaagttcaagaaaaaagccaacaaagaacttgaggagaaaaac
aggatgcttcaagaagacccagtgctcttccagttatacaaggacctggtggtgagccaa
gtgataagtgctgatgaattctgggccaatcatttaggcgatatgaaaaatgactccgcg
ccctacaacaacaaacaggatgttggtatttcaggagcctttctagcagacattcgacct
cagacggacggctgcaatggcctgagatataatctcacggctgacatcatcgagtccatc
ttcagaacgtatcctgcagtgaagcagaaatacagtgaaaatgtgcctcataacatgacg
gagaaggagttctggacccgatttttccagtcccattattttcacagagaccgcatcagc
acaggagcacaggacatcttctccgagtgtgccaaacaggatgagaaaggattaaagtcg
atggtggaacaaggagtcaggaaccctttggttgatcttctgtcattagaagataaaact
ttagatgaggtgggattcgaggaggatttaacgttgccacggcaacagcgcgctagtgtg
gttgacgtcctctgcttttgctgtgttttgttgcagggttatggagttaatgcctcttta
cccgcagcttccacgtccaacagaacagtgaaggagagcagcaatgcagccatcataaag
aggtttaaccatcacagcgccatggtgctggcagccggctcccaaacacgagagaagacg
accggccaagccaacgagaccagcagcacaaatggaagctcgagagattcggacgtcttc
cagcttcccgtaaagaaggccaaattacaagaagccaccgagtatgaggatctccaaagg
gaaaacaaaccaaaaacgatcgctttaaacctcaagaaatccgacagatacgctcacggc
cccgtgcccctccagtcccaacattacaccaccagtcaggacatcatcaactccgtcagc
tgcatccagcacgagatggccaactacaaacccaacctcactcaggtgttgtccagcaca
gccgccagctctgctattgcagctctttctccaggcggcgtcctcatgcaggcagccacg
cagcaaactgtaaatcagatggtccccagtgacgtccagggagagctgaaacatctgtat
gcagctgccggagagctgctgagacacttctggtcctgttttcccgtcaacacgccgttt
ttggaggagaaggcgagtgataaagatgaaatcaaacctagaaaagtttcagatgaccaa
gatttttcctttcaaggagaagattcagcgtcagtacttgagtacaaatgtaagtttgta
attggcagattaatgcgcaggcgcgactggcggcaggtagcgtttgcataa
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