KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00012856G001
Entry
GSTEN00012856G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K14406  cleavage stimulation factor subunit 1
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSTEN00012856G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tng03019]
    GSTEN00012856G001
Messenger RNA biogenesis [BR:tng03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     GSTEN00012856G001
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd WD40_Gbeta CSTF1_dimer Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_IFT140_1st Ge1_WD40 Beta-prop_VPS8 Beta-prop_DCAF4 Beta-prop_SPT8 Cytochrom_D1 PROPPIN Beta-prop_HPS5 Frtz Beta-prop_WDR11_1st
Other DBs
NCBI-ProteinID: CAF95996
UniProt: Q4STN6
LinkDB
Position
undetermined
AA seq 461 aa
MYRPKPTLKDRQHLYKLIISQLLYDGYISIANNLINEVKPESVVSPSEQLMQLAKIGMEN
DDSAVQYAIGRSDTVAPGVGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVASYSRDG
QLIATGSADASIKILDTERMLAKSAMPIEFSPVPKLSSTAAVQAAGAGFGDLLLALALQV
MMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRDYTLKLFDYSKPSAKRA
FKYIQEAEMLRSISFHPSGDFLLVGTQHPTLRLYDINTFQCFVSCNPLDQHTDTISSVSY
NPTANSYVTCSKDGSVKLWDGVSNRCVSTFEKAHDGAEVCSAIFSKNSKYILSSGKDSVV
KLWEISTGRTLVKYTGAGLSGRQMHRTQGVFNHTEDYVLLPDERTISLCCWDSRTAERKN
LLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFWYRRTTTD
NT seq 1386 nt   +upstreamnt  +downstreamnt
atgtatcgtccgaagccaaccctgaaagaccgccaacacctgtacaagctgatcatcagc
cagctcctctacgacggctacatcagcatcgccaacaacctgatcaacgaggtcaagccg
gagagcgtggtgtcgccgtcggagcagctgatgcagctggccaagatcgggatggagaac
gatgacagtgcggtgcagtacgctatcgggcgctcggacacagtagcgcccggtgtgggc
attgacctggagttcgacgctgatgtccagacgatgtctccagaggcgtcagagtatgag
acctgctacgtcacctcccataagggcccgtgccgcgtggcttcctacagccgcgacggc
cagctgatagccaccggctctgctgacgcctcaatcaagatcctggacaccgagcgcatg
ctggccaagagcgccatgcctatcgagttctcaccggttcccaaactctcaagcaccgct
gcggttcaggctgccggagcaggatttggtgatctccttcttgctctcgcgctccaggtg
atgatgaatgagacggcccagcagaacatggagaaccacccggtcatacggacgctctac
gaccacgtggacgaagtcacctgcctggcgttccaccccactgagcagattctggcctcc
ggctccagggattacaccctcaaactctttgactactcgaagccctcagcgaaacgagcc
tttaaatatatccaggaggcagaaatgctgcgttccatctcgttccacccttcaggagac
ttcctgctggtgggcacgcagcaccccaccctccgcctctacgacatcaacaccttccag
tgctttgtgtcgtgcaacccgctggaccagcacacggacaccatcagcagcgtgagctac
aaccccaccgccaacagctacgtcacctgcagcaaagacggcagcgtcaagctgtgggac
ggcgtctccaaccgctgcgtctccacgttcgagaaggcccacgatggagctgaggtctgc
tctgccattttctccaaaaactccaagtacatcctgtccagcggcaaagattccgtggtc
aaactgtgggagatctccacaggacggacgctcgtcaagtacacaggcgccgggctgagt
gggcgtcagatgcacaggacgcagggagtgttcaaccacacggaggactacgtgctgctg
ccggacgagcgcaccatcagcctgtgctgctgggactcgcgcacggcagagcgcaaaaac
ctgctgtcgctgggacacaataacattgtgcgctgcatcgtccactcgcccaccaacccc
ggcttcatgacctgcagcgacgacttcagggcccgcttctggtaccgccggaccaccacg
gactga

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