Tetraodon nigroviridis (spotted green pufferfish): GSTEN00014455G001
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Entry
GSTEN00014455G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00014455G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00014455G001
03041 Spliceosome [BR:
tng03041
]
GSTEN00014455G001
03009 Ribosome biogenesis [BR:
tng03009
]
GSTEN00014455G001
03016 Transfer RNA biogenesis [BR:
tng03016
]
GSTEN00014455G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSTEN00014455G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
GSTEN00014455G001
Spliceosome [BR:
tng03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
GSTEN00014455G001
Complex C
U4/U6.U5 tri-SnRNP related factors
GSTEN00014455G001
Ribosome biogenesis [BR:
tng03009
]
Eukaryotic type
Pre-60S particles
Helicases
GSTEN00014455G001
Transfer RNA biogenesis [BR:
tng03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
GSTEN00014455G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
MTR4-like_stalk
DEAD
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CAF97182
UniProt:
Q4SQA0
LinkDB
All DBs
Position
4
AA seq
1262 aa
AA seq
DB search
MADAFGDNLFSVFDDDEQTTTSKNVPASLTTDIGKVVGKDGTEMDPGPSVRGKRKADSDG
GEELFAKKSQLMSANEVNLAELMPQVKVEPVETVEGCTHEVALPVSDQYKPLKPRVGKAA
KEYPFILDPFQQDDILRIDNNDPVLGTAHTSAGKTAETKDVIFTSPIIALSIRKYMEMYD
EFLDVGMHLLNLSKYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI
NPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDAERGVVWEETIILLPDNVH
YVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF
REDNFNTAMQVLRDAGDSGGASGGGKWDPRGRKGGTKGLCVRNDKSCKCLYTVELPTSEL
HVDACCTGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNKEDEKRLVEE
VFNNAVDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKVQKLF
FSFCCLVWTIKGGPNVLFFSSQALFATETFAMGINMPARTVLFTSARKFDGKSHRFITSG
EYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNLLR
VEEINPEYMLEKSFYQFQHYRALPGVVEKIKKYEEQYHSIEIPNQESVVTYFKIRQQLAK
LGKEIQEFIHRPKYCLPFLQPGRLVKVQPPRALALRARHPPPHASAPLSPQVKNEDADFG
WGVVVNFNKKTNVKVSAGSAVQSNAQPVVTWRVSPPVQSCSDAEPLYVVEVLLHCSKESV
KDSATEAAKPSAPGEVGEMQVGAESTLKPTHLTHTHTPGLTHTVLLQVVPVMVQLLSALS
SVRLYIPKDLKPLDNRQLMLKSIQVRPRRPFLTRNAEPRSAERAAPPPQEVQKRFPDGIP
LLDPVDDMGIKDSALKKIIQKVEAFEHRMYSHPLHSDPNLESVYALCEKKALIGADIRAA
KRELKKAQTVLQMDQLKCRKRVLRRLGFASPSDVIEMKGRVACEISRWAGAPAGLSQAFW
DAGSEPPGLVYQPLTPRVCLPSGDELLLTEMIFNGLFNDLTVEQATALLSCFVFQENASE
MPKLTEQLAAPLRQMQECAKRIAKVSADAKLDVDEETYLNQFKPHLMDVVFAWANGSTFA
QICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGITKIKRDIVFAASL
YL
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgcttttggagacaatctgttcagcgtgtttgacgatgatgaacaaacgacc
acgagtaaaaacgtccccgcttccttaacgacagatatcgggaaagtcgtcggtaaagat
gggaccgagatggaccctggtccatctgtccgaggcaaaaggaaggcggacagtgacggt
ggagaggagctgtttgcgaaaaagtctcagcttatgtcagccaacgaagtcaatcttgca
gaattgatgccccaggtgaaggtggaaccagtagaaactgtggaaggctgcactcatgag
gttgctcttccagtcagtgaccagtataaaccactaaaaccacgggtggggaaggcagcc
aaggaatatccgtttattctggaccctttccagcaggacgacattctgcgcattgataac
aatgatcctgtcctggggactgctcacacctctgctggcaagacagcagagaccaaagat
gtgatcttcaccagccccatcatcgccctctccatccggaaatacatggagatgtacgac
gaattcctggacgtgggaatgcacctactcaatctgtctaagtatgccatcgcactggct
ctcagagagaagcagagagtgatcttcaccagccccatcaaggccctctccaaccagaaa
tacagggagatgtacgaggaattccaggacgtggggttgatgaccggggacgtcaccatc
aaccccaccgcctcctgcctcgtcatgaccacagagatcctgaggagcatgctgtaccga
ggctcggaaattatgagagaggtggcctgggtcatctttgatgaaatccactacatgaga
gatgcagagcgcggcgttgtgtgggaagagaccatcattcttcttcctgataacgtgcac
tacgtcttcctgtcagccaccatccccaatgccagacagtttgctgagtggatttgccat
cttcataagcagccgtgtcatgtcgtctacaccgactaccgccccacaccgctgcaacac
tacatcttcccagccgggggcgatggactccacttggtggttgatgagaacggagatttt
agagaggacaattttaacacagccatgcaggtacttagagatgcaggagattctggagga
gccagcggaggtggcaagtgggaccccagagggcggaaaggaggcaccaaaggtttgtgt
gttcgcaatgataaatcctgtaaatgtctttacacagtagagttgcctacttcagaacta
catgtcgatgcttgctgcacaggtccatccagcgtgttcaaaatcgtgaagatgatcatg
gagaggaatttccagcccgttatcattttcagcttcagcaagaaagaatgtgaagcctac
gccctgcaggttgccaagttagattttaacaaagaggatgagaagcgtctggtggaggag
gtgttcaacaatgcggtggactgtctctctgatgaagataagaaactccctcaggtggag
cacgtgctgccgctcctgaagagggggatcggaatccatcacggaggcctgctgcccatc
ttaaaggagaccatagagatccttttctccgaaggcctgctgaaggtgcaaaagctgttt
ttttccttctgttgccttgtttggacaataaaagggggaccgaacgtattgttcttttcc
tcccaggctttatttgcaacagagaccttcgccatgggtatcaacatgccggcccgcacc
gtgctcttcaccagcgctcgcaagtttgacggcaaaagccaccgttttatcacgtcaggc
gagtacatccagatgtccgggcgagctgggaggagaggaatggacgacaggggcattgtt
atcttcatggtggacgagaagatgagtccagctgtgggaaaacagctgctgaagggctca
gccgaccctttgaacagcgcctttcacctcacctacaacatggtgctcaacctgctgcgg
gtggaggagatcaaccccgagtacatgctggagaagtctttctatcagtttcagcactac
agggccctgcccggggtggtggagaaaataaagaagtatgaagaacaatatcacagcatc
gagattcccaaccaggagagcgtggtcacctacttcaaaatcagacagcagttggccaaa
ctgggcaaagagatccaggagttcatccacaggcccaagtactgcctgcccttcctgcag
ccgggccggctcgtcaaggtacagccgccgcgcgcgctcgcccttcgtgctcgccacccg
cctcctcacgcctccgccccactgtcgccacaggtgaagaacgaggacgccgacttcggc
tggggcgtggtcgtcaactttaacaagaagaccaacgtgaaggtgagcgccggctcggcc
gttcaaagcaacgcgcagccggttgtgacctggcgcgtttccccccccgttcagagctgc
agcgacgccgagccgctgtacgtggtggaggttctgctccactgcagcaaggagagcgtc
aaagactctgcgaccgaggcggccaaaccctccgccccaggggaggtgggagagatgcag
gtgggggcagagagcacactgaaaccaactcatctcacacacacacacacacctggtctc
acacacaccgtgttgctccaggtcgtcccggtgatggtgcagctcctgagcgccctcagc
tcggtccgcctttacatccccaaggacctgaagcctctggacaacaggcagctcatgctc
aagtccatccaggtacggccgcgtcggccatttttgacgcgtaacgctgaacccagatca
gctgaaagagccgctcctccaccgcaggaggtgcagaagcgtttcccagacggcattccc
ctgctggaccccgtggatgacatgggcatcaaagactccgccctgaagaagatcatccag
aaggtggaggccttcgagcaccgcatgtactcgcaccctctgcacagcgaccccaacctg
gagtccgtctacgctctctgcgagaagaaagcgctgatcggagcagatatccgagcagcc
aagcgggagctgaagaaagcccagaccgtcctgcagatggaccagctcaagtgcaggaag
agggtgctgcggcgcctgggcttcgccagcccctccgacgtcatcgagatgaagggccgg
gtggcctgtgagatcagcaggtgggcaggagctccggccggcctttcccaggcgttctgg
gatgctggatcggaaccccccgggctggtttatcagccgctaacgccgcgtgtttgcctc
cccagcggcgacgagctcctgctgactgagatgattttcaacggcctcttcaacgacctg
acggtggagcaggccaccgccctgctgtcctgcttcgtctttcaggaaaacgccagcgaa
atgcccaaactgaccgaacagctggctgcgccgctgagacagatgcaggagtgtgcgaag
cgcatcgccaaagtgtctgcagacgccaagctggacgtggacgaggaaacgtacctgaac
cagttcaagcctcacctgatggacgtggtgttcgcctgggccaacggctccaccttcgca
cagatctgcaagatgacggatgtttttgaagggagcatcatccgctgcatgcgccgtctg
gaggaggttctgaggcagatgtgctctgcagccaaggccatcggcaacacggaactggag
aacaagtttgctgaaggaattaccaagatcaagagagacatcgtttttgccgccagtctt
tacctg
DBGET
integrated database retrieval system
