Tetraodon nigroviridis (spotted green pufferfish): GSTEN00014601G001
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Entry
GSTEN00014601G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00014601G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00014601G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00014601G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00014601G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-ProteinID:
CAF97288
UniProt:
Q4SPZ4
LinkDB
All DBs
Position
7
AA seq
284 aa
AA seq
DB search
MPAALTDSSQIICEVWASNVEEEMRKIRQIIQSYNYIAMDTEFPGVVVRPIGEFRSTVDY
QYQLLRCNVDLLKIIQLGLTFMNEDGDYPPGTTTWQFNFKFNLTEDMYSQDSIDLLQNSG
LQFKKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDARLPEEEHE
FFQILNLFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFR
MKELFFEDNIDDAKYCGRLYGLGSGSSQPQNGLSSSGAEETNNK
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgccagccgcgctcacagattccagtcagataatctgtgaagtctgggcaagcaatgtg
gaggaggaaatgagaaaaatccgtcagattattcaaagttacaactacatcgccatggac
acagaatttcctggagtggtggtccggcccatcggagagttccgcagcacagtggactac
cagtaccagctgctcaggtgcaacgtcgacctcctgaagatcatccagctcggcctcacg
ttcatgaacgaagatggagactatcctcccggcacgacaacatggcagttcaactttaaa
tttaacctcacagaagacatgtactcacaggattccatagatctactacagaactctggc
ctccagtttaaaaagcacgaagaagaaggcatcgacacgctctactttgctgaactcctc
atgacgtccgggctggtgctgtgtgagaacgtcaagtggctctccttccacagcggctac
gactttggctacctggtgaagctcctgacggacgcacggcttccggaggaggagcacgag
ttcttccagatcctcaacttgttctttcctgccatctatgacgtgaagtatttgatgaag
agctgcaagaacctgaagggaggcctgcaggaagtcgcagaccagctggagctgaagagg
atcggacggcagcatcaggccggatccgactcgctgctcaccggcatggcttttttccga
atgaaagagctcttctttgaggacaacatcgatgacgccaagtattgtgggagattgtac
ggcctgggctcgggctccagccaaccccagaacggcctgtccagctcgggagcagaggag
acgaacaacaag
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