Tetraodon nigroviridis (spotted green pufferfish): GSTEN00014716G001
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Entry
GSTEN00014716G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00014716G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00014716G001
03012 Translation factors [BR:
tng03012
]
GSTEN00014716G001
Enzymes [BR:
tng01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSTEN00014716G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
GSTEN00014716G001
Translation factors [BR:
tng03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
GSTEN00014716G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
CAF97376
UniProt:
Q4SPQ6
LinkDB
All DBs
Position
16
AA seq
706 aa
AA seq
DB search
MLSSISHLVLDEIHERNLQSDVLLIIVKDLLSLRDDLKIILMSATLNADKFSKYFDRCPM
IHIPGFTFPVEEFLLEDVVQMIRYRPQKKEQKPWRKKGFWQGQNFRPEKEEKEAEYAESW
PCYARTLKERYCERGRRLRFNHAVLLFGVKEKKKPCSHISMFYRYSDDTIEAVEMLDSNE
KIDLELIASLIRQIVLNEGEGAILVFLPGWDGISSLNDLLMAQQMFRSDRFVIIPLHSLM
PTVNQTQVFKKPPPGVRKIVIATNIAETSITIDDVVYVIDGGKIKETHFDTNNNISTMTE
EWVSLANAKQRRGRAGRVCPGKCYHLYNGLRASLMDAYQLPEILRTPLEELCLQIKVILK
LGSIARFLEKALDPPTEKAVSLAIKNLMDLNALDHAENLTALGFHLARLPVEPHIGKLIL
FGAMLGCLDPVLTIAASLSFKDPFFIPLGKEKMADMRRKVLSRNSKSDHLTIINAFQGWE
QAKQRGARYEREYCWDNFLSANTLQMLQNMKGQFAEHLMHAGFVSSPDPKDPKSNVNSDN
EKLIKAVIVAGLYPKVAKIRQSFSKKNPRVKVYTQSDGKVSIHPKSVNAEEQEFNYKWLI
YHLKMRTSSIFLYDCTEVSPFSLLFFGGDITIQKDEGDEMVAVDQWIVFRCPARIAHLVK
SLKKELDSLLEEKILNPAPVDWQNSQSKDCAVISAIIDLITTQEKP
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccagcatcagtcacttagtgctggacgaaatccacgagagaaacctacagtcg
gacgtgctgctcatcattgtcaaggacctgctcagcctacgggatgacctcaaaatcatc
ctcatgagcgccacgctcaatgcagacaagttctccaagtatttcgacaggtgcccaatg
atccacatccctggttttaccttccctgtggaggagttcctgctggaagatgtcgttcag
atgatcaggtatcgtcctcagaagaaggagcaaaaaccctggcgaaaaaaaggcttttgg
caggggcaaaatttcaggcctgagaaggaggagaaggaggcggaatatgcggaaagctgg
ccttgttatgcacgcactctgaaagagaggtactgtgagagggggagaaggctcaggttt
aaccatgcagttttgctgtttggagtaaaagaaaaaaaaaaaccatgcagtcacataagt
atgttttacagatactccgacgacaccatcgaagcagtagagatgctggacagcaatgag
aagattgacttggagctgatcgcgtcactcatccgccaaatcgtgcttaatgaaggggaa
ggagccatcttggtgttcctgcctggctgggatggcatcagcagcctcaatgacctgctc
atggcccagcagatgtttcgatcagaccgattcgtcatcatccccttgcactcgctcatg
ccaacagttaatcaaacgcaggtgttcaagaaacctccccctggagttagaaagatcgtc
atcgctactaatatagctgagaccagcatcaccatagacgatgtcgtttacgtgatagat
ggaggcaaaattaaagagacccactttgacaccaacaacaacatcagcaccatgacagag
gagtgggtcagcctggccaacgccaaacagaggcgaggacgtgctggcagggtgtgtccc
ggaaagtgctaccatctgtacaacggtctgagggccagcctgatggacgcctatcagcta
cccgaaatcctgcggacgcctctggaggaactgtgcctgcagatcaaggttatactgaag
ctcggctctatagctcggtttttggagaaagccctggaccctcccacagaaaaagccgtc
agcctggccatcaagaatctcatggatctgaatgcactggaccatgcagagaatctaacg
gccctgggtttccacctggcccgcctgcccgtggagcctcacataggcaaactcatcctg
ttcggagcgatgctgggctgcctcgaccccgtcctcaccatcgccgcttcgctcagcttc
aaagaccccttcttcatacccctgggcaaagagaaaatggcggacatgaggaggaaggtg
ctatcaaggaattcgaagagcgaccacctcaccattatcaacgctttccagggatgggag
caagcaaagcaacgcggggccaggtatgaacgggaatactgctgggataactttctgtct
gccaacacgctccagatgctacaaaacatgaaaggtcagtttgcggagcatctaatgcac
gctggcttcgtcagcagtcctgaccccaaagaccccaaatctaatgtcaattcagataac
gagaagttaatcaaggctgtgattgttgctggcctgtaccctaaggtggccaagatcagg
cagtccttcagcaaaaagaacccgagggttaaggtgtatacccagtccgacgggaaggtt
tccatccacccgaagtcggtgaacgccgaagagcaggagttcaactacaagtggctcatt
taccacctgaagatgagaacaagcagcatcttcctgtacgactgcaccgaggtgtccccg
ttctcgctgctgttcttcgggggagacataacgatccagaaggacgagggcgacgagatg
gtggccgtggaccagtggatcgtcttcaggtgcccggcgcgcatcgctcacctcgtcaag
agtttaaagaaagagctggattccctgctggaggagaaaattctcaaccctgctccggtg
gactggcaaaacagccagtccaaggactgcgccgtcatcagcgccatcatcgacctcatc
accactcaggagaagccc
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