Tetraodon nigroviridis (spotted green pufferfish): GSTEN00015718G001
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Entry
GSTEN00015718G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00015718G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00015718G001
Enzymes [BR:
tng01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
GSTEN00015718G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
GSTEN00015718G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
R3H
Motif
Other DBs
NCBI-ProteinID:
CAF98128
UniProt:
Q4SMK4
LinkDB
All DBs
Position
18
AA seq
614 aa
AA seq
DB search
TDFKECLNTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKHSMDFL
LFQFGVCTFKYDQTKSKYIIKPFNFYIFPKPFNRTSPDKKFICQSSSIDFLASQGFDFNK
VFCNGIPYLNQEEEAQLREQTEERRNQHANGVGTPSYISPSSSKGPAHVPDEHKDFINKV
IERVEALFGSSEKSLDLEPCTGFQRKLIYQTLNWKFPKGLHVETIETQKKERFIQVSKVD
EEERKKREQQKLEREQEELNDAVGFSRVIHAISQSGKLVVGHNMLLDVMHTIHQFYCPLP
EELQEFKEVTMCVFPRLLDTKLMASTQPFKELISNTSLAELEKQLKEKPFKPPQVETAEG
FPSYDAAKEQLHEAGYDAYITGLCFISMTNYLGSFLTPPKAYISARSKLIEPFFNKLFLM
RIIDIPYLNITGPDRTWQTHPGRSSFRSQQLTFVLFLQCNLNETTFYTSPSQKNGRPVTS
TSCSVPSVKHLLQLHTHTHTHICSTLSAFLQTLLRKHPGFLDRRHVCVRVPQSDGPGSDS
DEHQPLRRELQDPDVRRVRPEQTGQGQGEGEGRSDGQTVGRRRMGQVSLHYLQQLRVPQV
RPCRARFYRGDLRG
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
acagattttaaagagtgtttgaacacggtatacagtgcaattgaagaggcagattttctt
gccatcgatggagaattttcagggataagtgatggtcccaatgtcagcgcactgaccaat
ggactggacacaccagaggagcgatatacaaagcttaagaagcactctatggactttctg
ctcttccaatttggagtatgcacattcaagtatgatcagacgaagtcaaagtacattata
aagccttttaatttttacatattccccaagcccttcaacaggacgtcacctgacaaaaag
ttcatctgtcagagttccagcatcgatttcctggccagtcagggatttgatttcaataag
gtgttctgtaacggaattccatatcttaatcaagaggaggaagcccagcttagggagcag
actgaggagaggcgaaatcaacacgccaacggtgtgggaactccgtcctatatctctccc
tcctcctccaaaggccctgcccacgtaccggacgaacacaaggacttcatcaacaaagtc
atagagagggtggaggctcttttcggcagctccgagaagtcgctggacctggaaccctgt
actgggttccaaagaaagctgatctaccagacgctgaactggaagtttccaaaggggctt
cacgtggaaaccatcgaaacccaaaaaaaggaacgatttatccaggtcagcaaagtggat
gaggaggagaggaagaaacgggaacagcagaagctggaaagagagcaggaggagctgaac
gacgctgtgggcttctccagagtcatccacgccatttcccagtccgggaaacttgtggtc
ggccacaacatgctgctggatgtgatgcacaccatccaccagttctactgtcctctgccg
gaggaactgcaagagtttaaagaagtgaccatgtgtgtttttccaaggcttctggacaca
aagttgatggcttccacccagcctttcaaggagctgatcagcaacacctctctggcagag
ctggagaagcagctgaaggaaaagcccttcaagccgccacaagtggaaacggccgaggga
ttccccagttacgatgcggccaaggagcagctccacgaggccggctacgacgcttacatc
accggcctctgtttcatctccatgaccaactatctgggctccttcttgaccccgcccaaa
gcgtacatctctgcccggtccaagctgattgagccttttttcaacaagcttttcctgatg
aggatcattgacattccctacctcaacatcacagggcctgaccgtacgtggcaaacccat
cctggcagatcctccttccgatcacagcagttgacctttgtgctcttcctgcagtgcaac
ctaaacgagacaacgttttatacgtcaccttcccaaaagaatggaagaccagtgacctct
accagctgttcagtgccttcggtaaagcatcttcttcagctacacacacacacacacaca
cacatatgttccactttgtcagcttttttgcaaactctcctcaggaaacatccaggtttc
ctggatcgacgacacgtctgcgttcgtgtccctcagtcagacggaccaggttcagatagc
gatgaacaccagccgctacgcagagagctacaggatccagacgtacgccgagtacgtcca
gagcaaacaggacaaggacaaggagaaggagaagggcgctcagacggccaaaccgtgggg
agaagacggatgggtcaagtctccctacactacctccagcagcttcgggtacctcaggta
cgcccgtgtcgagcgcgcttttacaggggcgacctgcgtgggtga
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