Tetraodon nigroviridis (spotted green pufferfish): GSTEN00015899G001
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Entry
GSTEN00015899G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GSTEN00015899G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tng03019
]
GSTEN00015899G001
Messenger RNA biogenesis [BR:
tng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSTEN00015899G001
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
GSTEN00015899G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-ProteinID:
CAF98252
UniProt:
Q4SM80
LinkDB
All DBs
Position
13
AA seq
569 aa
AA seq
DB search
MFGARKKFVEFVEAVDNDFPDESMYYNQPSMFPHRSDKDVSFPPTPPYRPVVPSNLHSVF
VTFPSDAFLSLAVVVKSAVAAWCKFVRSTKCTWLLGEGHGKQHTAAKPKSNSRHAATQSY
HSYNRGPHHVPPYSSISEQVGTGAADPVSTPAFAPDPLWCLNRGTLPMNSRNMLNHSQVG
QGIGMSGRTNSMGSSGLGSPNRSSPSIICMPKQQPARQPFTINSMSGFGMNRNQVFGMNN
SIFNGTDGSENITGLDLSDFPALADRSRRDGTGNPTPVLNPLAGRAPYVGMVTKPSSEQT
QDFSIHNEDFPALPGPNYKDATLNNDESKTNLNSTSKSTSSADGPKFPGDKTASAQNNNQ
KKGIQVLPDGRVTNIPSGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNS
PENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMN
GGDLLQLLAAAELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCHNWRKVA
KEFHLEYDKLEERPHVPSIFNYNPAQQAF
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtgctaggaagaaatttgtagagttcgttgaggcagtcgacaacgactttccc
gatgaaagcatgtactacaaccagccgtcgatgttcccacatcggtcggacaaagacgtg
agttttcctccaacgccgccgtaccgtccggtagttccttcaaaccttcactctgtcttt
gtgaccttcccctcagatgctttcctctccctcgccgtcgtcgtcaagtcagctgtcgca
gcttggtgcaagtttgtacgctccacaaagtgcacttggcttctcggtgaggggcatggg
aaacaacacaccgcagctaaaccgaaatctaactcaaggcacgcagctacccagtcatat
cactcctacaacaggggtccccaccatgtccctccatactcctccatctccgagcaggta
ggcaccggtgccgctgacccagtttccacgcccgccttcgctcctgatccgctgtggtgt
ttgaacagggggacgttgccgatgaattccaggaacatgctgaatcactctcaggtcggt
caaggcatcgggatgagcggcaggaccaacagcatgggcagctcgggcttgggcagcccc
aaccgcagctcgcccagtatcatctgtatgcccaaacagcaaccagcacgccagcccttc
accatcaacagcatgtcagggttcggtatgaaccgcaatcaggtttttgggatgaataac
agcatctttaacggtacagatgggagtgaaaatataaccggactggatctgtcggacttc
cccgcgttagcagacaggagtcggagagacggcactggaaacccaacgccggtgctcaac
ccgctggctggccgggctccttacgtcggcatggtgacaaaaccatcaagtgaacagacg
caggatttctccatccacaatgaggattttcccgccctgcccggcccgaattacaaagac
gccacgctgaacaacgatgaaagcaagactaacttgaactccacgagcaagagcacgtcc
agcgcagacgggcccaagtttcccggagacaaaactgcctcagcacagaacaacaaccag
aagaaagggatccaggtgttgcctgatggccgggtgacgaacattccctctgggatggtg
acggaccagttcggcatgatcggcctgctgacctttatccgggcagcagagacggatccg
gggatggtgcatctggctctgggaagcgacctcacgacactgggactcaacctgaactct
ccggaaaacttgtacccaaagttcgcctcgccgtgggcatcctcaccctgtcgacctcaa
gacatcgacttccacgttccctctgaatatttaaccaacatccacatacgggacaagttg
gcagcgatcaaactggctcgatatggagaagacctgctgttctacctgtactacatgaat
ggaggagacctgctacaactgctggcagcagcagagctctttaaccgggactggaggtac
cacaaagaggagcgggtctggataacgagggcgcccggcatggagcccacactaaaaacc
aacacgtacgagaggggaacctactacttttttgattgtcataactggagaaaagtagcc
aaggaatttcacctggagtatgacaagctggaggagaggccacatgtgccatcaatcttt
aactacaacccagcccagcaggccttctaa
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