KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00016542G001
Entry
GSTEN00016542G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03018  RNA degradation
tng03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSTEN00016542G001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSTEN00016542G001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tng03019]
    GSTEN00016542G001
   03041 Spliceosome [BR:tng03041]
    GSTEN00016542G001
Messenger RNA biogenesis [BR:tng03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSTEN00016542G001
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GSTEN00016542G001
Spliceosome [BR:tng03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GSTEN00016542G001
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-ProteinID: CAF98730
UniProt: Q4SKV2
LinkDB
Position
undetermined
AA seq 88 aa
MAATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEVTPEG
RRITKLDQILLNGNNITMLIPGGEGPEV
NT seq 267 nt   +upstreamnt  +downstreamnt
atggcggccacgaatccttcgcagttgcttccacttgagctggtggacaaatgcattggt
tcaagaattcacattgtcatgaaaactgacaaagagatcgtcggcaccctgctgggattc
gatgatttcgtcaacatggtcctggaagacgtgacagaatttgaagtcacaccagaaggg
agaagaatcaccaaactggaccagattctgctcaacggcaacaacatcaccatgctcatc
cctggaggagaaggtcctgaagtatga

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