Tetraodon nigroviridis (spotted green pufferfish): GSTEN00017814G001
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Entry
GSTEN00017814G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tng03000
]
GSTEN00017814G001
Transcription factors [BR:
tng03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
GSTEN00017814G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-ProteinID:
CAF99661
UniProt:
Q4SI71
LinkDB
All DBs
Position
5
AA seq
689 aa
AA seq
DB search
MACSPATEQFISRGTRKRNGTESSCMEKLLSKDWKEKMERLNTSELLAEVKGLPSSLSRL
NIEILEWLFSKRACFTVQRKSRASTTIPPVFTRRREDAARVPHSHLLRVVLQLLQDRLGS
KNILGIQPQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQFIPS
TMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKVPPLPQPLNTSGPISPSSLKNDKISTS
PLTQVKEEGTQPLNLSARPKTTDMVKSPTSPTQNLFLGSKNSPSLLPSKGGIPSPLGGGL
GRSSSLDILSSLNSTALFGDQDTVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALTSV
GLNNCRTDKEKIHFDSVGHHFGKLGEEGKIGHRVIDLTRPEDLDGPKEVNGSADKPQPYY
CWPTGGTGSAEARVFREARGRNSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISK
ILGSRWKAMSNQDKQPYYEEQARLSKLHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQL
MRSRRQEMRQFFTVGQPPQIPITTSPSMVYPGAITMTNTTPSPQMTSECSSASASPEPSI
PVIQSTYNMKLEPNAMANSEPVNGEDEMDLYEDFEDEPKSDYSSENDTQEQKRPSLLLEL
GCIRVGPDKTLAPPKWPSLELTRRDNGTG
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcctgctccccagccacggagcagtttatctcgagagggacaaggaaaaggaatgga
acggaatcctcttgtatggagaaacttctctctaaagactggaaggagaagatggaacgg
ctcaacaccagtgaactgctggcagaagtcaaaggcctgccttcgagcctcagtcgactt
aatatagaaatattggaatggctgttttccaagagggcttgttttactgtacaaaggaag
agccgagccagcacaacaataccgcccgtgtttacgaggaggagggaggatgctgcccga
gtgccacactcacatctgctgcgcgtcgttctccaactcctccaagatcgtcttggcagc
aaaaacatcctgggcattcagccccaggtccagggtcacatgcctccgctcatgatcccc
atttttccacacgaccaacgcactctggcagcagctgctgccgcccagcaaggctttctc
ttccctccaggaatgtcttataagccaggtgataactacccggtgcagttcattccatcc
acaatggcagctgcagcagcgtcaggactgagccccctccagcttcagcaactctatgcc
gcccaacttgccagcatgcaggtctctcccggagccaaggtgcctccgcttccccagccc
cttaacaccagtgggcccatctctccttcatctctgaagaatgacaagatctccaccagt
cctcttactcaagtcaaggaggaaggaacacagccacttaacctgtctgcacggccaaag
acgacagatatggtcaagtcccccacatccccaacacaaaacctgttccttggcagtaaa
aacagtccgagccttctccccagtaagggtgggattcccagtccactgggaggaggcctt
ggccgtagctcatctctggatattctgtccagcttaaactccaccgcattgttcggggac
caggacacagtgatgaaggctatccaggaggcccggaagatgcgggagcagatccagagg
gaacagctgcagcatcaccagcagggcatggaggcgaagctgtctgccctcacttcagtg
ggcctcaacaactgcagaaccgacaaggagaagatacactttgacagcgttgggcaccac
tttggcaagttgggtgaagaaggaaagatcggccacagagtgatcgacctgaccaggccg
gaggatctggacgggcccaaggaggtaaatggttctgcagataaaccccaaccctattat
tgttggccaacaggaggcactggatctgcggaagcgcgagtcttcagggaagccagaggg
aggaacagcaatgagccccacattaaaaggccgatgaatgcgttcatggtgtgggccaag
gacgagcggcgcaagatcctccaggcctttcctgacatgcacaattccaacataagcaaa
atattaggctctcgatggaaggcaatgtccaaccaggacaagcagccctactacgaagaa
caggcccgtctgagtaaactccacctagagaagtacccgaactacaagtataaaccccgg
cctaagagaacctgcatcatcgatgggaaaaagcttcgcattggagagtacaagcagctg
atgcgctcacggcggcaggagatgagacagttcttcactgtgggacagccaccgcagatc
cccataactaccagccctagcatggtctacccaggggccatcaccatgacaaacaccaca
ccgtcacctcagatgacatccgagtgctcgagtgcttcggcaagtcctgaaccgtccatc
cccgtcatccagagcacctacaacatgaagctagagcccaacgccatggcgaacagcgag
ccggtcaacggcgaggacgaaatggacctgtacgaggactttgaggatgagcccaaatca
gactatagtagcgaaaatgacacacaagagcagaagaggccaagcctgctgctggagctg
ggctgcatccgagtgggccccgacaaaaccctggccccgccgaaatggcccagcttggag
ctaacgcgcagagacaatggcacagggtga
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