Tetraodon nigroviridis (spotted green pufferfish): GSTEN00018553G001
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Entry
GSTEN00018553G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tng03000
]
GSTEN00018553G001
Transcription factors [BR:
tng03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
GSTEN00018553G001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-ProteinID:
CAG00200
LinkDB
All DBs
Position
3
AA seq
484 aa
AA seq
DB search
MNLLDPYLKMTEEQEKCHSDAPSPSMSEDSAGSPCPSGSGSDTENTRPSDNHLLLGPDYK
KENEEEKFPVCIRDAVSQVLKGYDWTLVPMPVRVNGSNKNKPHVKRPMNAFMVWAQAARR
KLADQYPHLHNAELSKTLGKLWRLLNEVEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKS
VKNGQNDSEDGEQTHISPNAIFKALQQADSPASSLGEVHSPGEHSGQSQGPPTPPTTPKT
DLVSGKADLKREGRPTQEGTSRQLNIDFGAVDIGELSSEVISNMGSFDVDEFDQYLPPHS
HAGVSGVPQAGYTGSYGISGSSVSQTGSVGTQAWMSKQQQQQQQQQQQHPLTTLGGGGEQ
SQQGQQRPAQIKTEQLSPSHYSEQQSSPQHVTYGSFNLQHYSAASYPSMRAQYDYSDHQG
GANSYYSPTTGQGSGLYSTFSYMNPSQRPMYTPIADNAGVSSVPQTHSLQHWEQQPIYTQ
LSRP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctcgacccatacttgaaaatgacagaagaacaggagaagtgtcactccgac
gctcccagccccagcatgtccgaggactccgcgggctctccgtgcccgtccggctccggc
tcggacactgagaacaccaggccgtccgacaaccacctccttctgggtccagactacaag
aaggaaaacgaagaagagaagttccccgtgtgtatcagagatgcggtgtcccaagtgctg
aagggttacgactggacgctggtgccgatgccggtgcgcgtcaacggctccaacaaaaat
aaacctcacgtgaaaagacccatgaacgcgtttatggtgtgggcccaggctgcgcggagg
aagctggcggaccagtacccgcatctgcacaacgcggaactgagcaaaaccctgggcaaa
ctctggagattactcaatgaggtggagaagcggccgttcgtggaggaggcagagcgtttg
agggtgcagcacaagaaagaccaccctgactacaagtaccaaccgaggcgaaggaaatcc
gtcaaaaacgggcaaaacgactccgaggacggagagcaaacccacatctcacccaatgcc
attttcaaggcgctgcagcaggccgactccccagcctcgagtttgggcgaggtgcactct
ccaggcgagcactcaggtcagtcccagggcccaccgacacccccgaccactcccaagaca
gacctggtctctggcaaggctgatctgaaacgagagggccggcccacgcaggagggcaca
agccgtcagctcaacatcgacttcggcgccgtggacatcggcgagctgagcagcgaggtc
atttccaacatggggagcttcgacgtggacgagttcgaccagtacctccctcctcacagc
cacgccggggtgagcggcgtcccgcaggccgggtacaccggcagttacggcatcagcggc
tcctccgttagccagacgggcagcgttgggacccaagcctggatgtccaagcagcagcag
cagcagcagcagcagcagcagcagcaccccctgaccaccctgggtgggggaggagagcaa
agccagcagggtcagcagaggcccgcccagatcaagacggagcagctgagtccgagccac
tacagcgagcagcagagctccccgcagcacgtcacctacggctccttcaacctgcagcac
tacagcgccgcctcctacccctccatgagagcgcagtacgattattcagaccaccaaggt
ggcgccaactcctactacagccccacgacgggccagggctccgggctctactccaccttc
agctacatgaaccccagccagaggcccatgtacacccccattgccgacaatgccggggtc
tcctccgtcccccagacccacagtctgcagcactgggagcagcagcctatttacacgcag
ctctccaggcca
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