Tetraodon nigroviridis (spotted green pufferfish): GSTEN00018943G001
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Entry
GSTEN00018943G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tng03009
]
GSTEN00018943G001
04121 Ubiquitin system [BR:
tng04121
]
GSTEN00018943G001
Enzymes [BR:
tng01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
GSTEN00018943G001
Ribosome biogenesis [BR:
tng03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
GSTEN00018943G001
Ubiquitin system [BR:
tng04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
GSTEN00018943G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
FANCL_C
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
zf-C3HC4_2
Motif
Other DBs
NCBI-ProteinID:
CAG00481
UniProt:
Q4SFV1
LinkDB
All DBs
Position
7
AA seq
1818 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSSRAAEALSRESGVIPGFVGFDATANLDLSYVPAVAGVDEIDN
LVDAEFRLVLRKMSKRDVTTRLKAVQDFASMCQERDSEVVKGVLPYWSRIYCKISVDHDR
RIREATQQAFEQLVLKVGRSLAPFLKSLMGHWILSQCDPYTPSASAACQAFQAAFSASKQ
PEALNFCKDEILNVSKNGNCVKHAFVFIYNLKYDSVLQVIQDILLKETADTLSDTQNVTA
EEKEAKYVRMLTCSLLGVKRLLSLVQPTDTAALEQKLSDLVKSGKFWKYSKHKTAQVRGA
FFQLVCALCEFTPGLVVSQAAPLCPAVLLSIDDTDPAVLPSVWEAVLHVVSTVPDCWTHV
NAKKGFLPKLWALLKEGGKGMAKALHPNLMPLLSKLPQEITSPSLDFYSTFFTSFIQGLP
SERAASSPSESAVIVTSVVECLRYCILIRGTAYCTTPMKMKISKKLRTMLISQQLLPLLA
KALGSPSLRNGPLFLMVTEMLWSWEKKAGLHGDDVSSNRDIFQLLLADFWQELRILFVPN
VNTEEADLQRLEGMATLLQVMCHPETGNKRHPQKKKSVKICLEKEEDSENTGAKGGSVEH
TAHPVSEPVKEPAFGSLKTQHLEDLVCQLVQLCLAQVNDNKSETHLVFLSLLLRSFHTPR
VFKTLVGDKLNDTEQQHPVKNPAMQFLLEQVVLWLSETGRTDIDHLVEIIFSSLSCCSSQ
ETTCILNHISMVTEFGESDQLLYFFNPKTLHSCGDWLKGSVLGEQLLGLVEELCRIDGGS
AVSAYSAGDHRWALISLVLSQNHNNESLIGEVYMEKILEKLHVTLSKTKSLSDEGNLLPL
ISFICDVTFTFFSTVQDCFSLLSAQDLLFTVFQFTAQDQTRSLLTDPLFQKLWAVCKTGV
QSLAQNSECEVKEGSFLHSAAVWVKHQMLTSSLDLDGFRVLVQAVQAIVETVVASSGHDS
PLLIHFLSALMPSQPQWKRIRQDLPLQWVKSPLLSSRYRGVCEQPSVDVWKSKVSTRLPA
HLCAAAMLSKVAQLSAFSPSEQEADCPSHQQNLKYTVSELLYTLQWCKEVGYNPALVASY
HSLLVEWGLPGQLYNLLPLEDVLETLYSRSVADGDLWSLTLGDYIHVNKLAETHSAKLRK
LYSSADRFLRLSATQLNTVQVLCPIMAQEDKESLAALAVNGIISWRETDSEDTHTHAHTH
MPKFTFGILDWKFVLCVIDVYECLAVLLCCLKADTPVQNELLQSVVATMMEWRSTNENWF
LFDSDLSKATTQELNLAVEMMRLLSWLVSHRPTVLESSQWDFLLCSMLAWLEVAKENVRS
LWNPWVQLFFCEDAALITSLNQFFTALPPDVLEKLPPELSGEWTDFFIDGIYNVLLPLPA
SITDAFSEPDDPVFPLVVLQSVGQALIYVPVEKLIHNSLKPRFIASQKTNLPDGLQTLLN
TFCPQLLFRARPLQITTYHLLDKIMPELPAWDKDHKFDDEEDEPCLSPPASLMTLLSTCE
DLCENILAGVQVGEFAVVQPLSMEFSCILGYLLAWKLLLTFFKSSPTDLRALYAQYLKRN
GSLNKLLLFLFKLMPENPVYPGQGTETKESKTFFTESLSLDVDKSVNVRCELPHLACSVY
YSTLQDMPAMVRLWWNSQEKRVSTVVEKFTVKYISPVLSAQEISSVQLSDQLSDSMAVKA
RSAAREVIATYSVDDIFIELVIQLPQNYPLGSIAVDSGRRVGIALQQWRNWMLQLSTYLT
HQNGSIMEGLTLWKNNVDKRFEGVEDCMICFSVIHGSNYSLPKKACRTCKKKFHSACLYK
WFTSSNKSTCPLCRETFF
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgggtggtaaaaacaaacagcgaactaaaggaaatgttcggccttccagtagcagccga
gctgctgaggccctcagtcgtgaaagtggggtcattcccgggtttgttggcttcgatgca
accgctaatctggatctgagttatgtccctgctgtcgccggcgtggacgagatcgacaac
ctggtagatgccgagtttcgcctggtgctcagaaaaatgtccaagagggacgtcaccacc
cggttaaaggctgtgcaggactttgcatccatgtgccaggagcgagattcagaagtggtg
aagggggtcctgccgtactggtccagaatttactgcaaaatatcagtggaccatgatcga
cggatcagggaggcgacccaacaagcttttgaacaactggttttgaaggtgggtcgcagc
cttgccccgtttctaaaaagcctgatgggacattggattctgtctcagtgtgacccctac
acgccgtctgcttcagctgcatgtcaggcctttcaggctgctttctccgcttccaagcag
ccagaagctcttaacttctgcaaggacgagatccttaatgtgagtaagaatggtaactgt
gtaaaacatgcttttgtcttcatatataatttaaaatatgattctgtgttgcaggtcatt
caagatatcttgctaaaggagacagctgacacacttagtgatacccaaaatgtgacagct
gaggagaaagaagccaagtatgtgcgtatgctgacctgttcccttttgggggtgaagaga
cttctgtcactggtccagcccactgacacagctgccctggagcaaaagctatcagatctg
gtgaagtctgggaagttttggaagtacagcaaacacaaaacggcacaggtgcgaggggct
tttttccagctcgtgtgtgctctgtgtgagtttactcccggactggttgtgagtcaggcg
gctccactctgccctgctgtcctcctcagcattgatgacacagaccctgcagtgctgccc
tctgtttgggaagctgttcttcacgttgtgtcgacggtccctgattgctggacacacgta
aacgctaagaagggcttcttgccaaaactctgggcactccttaaagagggaggcaaaggc
atggctaaagccctccaccctaatttaatgccactcctgagcaaactgccccaagagatt
acttctccaagcttggacttctacagcaccttcttcacttcatttatacagggtctgccc
agtgagcgggcggcatccagcccatcagagagcgcagtcatcgttacttctgtggttgag
tgtttgaggtactgcatactgattcgaggtactgcatattgcaccacaccgatgaagatg
aagatcagcaaaaaattgaggaccatgctgatatcacagcagctgcttcctctgcttgcg
aaggctctgggcagtccttccttacggaatggtccgctgttcctcatggtcacggaaatg
ctttggtcttgggagaaaaaagcgggcttacatggtgacgatgtcagcagcaacagggat
atttttcagctgcttctggcagatttctggcaggagcttcgaattttgtttgtgcctaac
gtcaacaccgaggaagcagatctgcaacgtctggagggaatggccaccttgctgcaggta
atgtgtcaccctgagacaggaaataaaaggcatcctcagaagaagaagtctgttaagatc
tgtttggaaaaagaagaagacagtgaaaacactggcgctaaggggggcagcgttgaacat
actgcacacccagtgtcggagcctgtaaaagagccagcatttgggtccctaaagacacaa
catttggaagatttagtttgtcagctggtccagctgtgcctggcgcaggtgaacgacaac
aagtcagagacgcatcttgttttcctttccctgctactgcggtcattccacacacccaga
gtcttcaagacgctggtgggtgataaattaaacgacactgagcagcagcatccggtgaaa
aaccctgccatgcagttcctgctagagcaggtggtgctgtggctgagtgagacggggcga
accgacatcgaccacctggtggaaattatcttcagctcgctgtcctgctgcagcagccag
gagaccacctgcatcctcaatcacatctccatggtaacggaattcggagagtcagatcaa
cttttgtatttctttaatcccaagactcttcatagttgtggtgattggctcaagggttcg
gttctgggcgagcagctcctgggacttgttgaggagctctgcaggatcgacggcggctcc
gctgtttctgcatattcagcaggcgatcatcgttgggcactgatcagtctggttctttct
cagaaccacaataatgagtctctgatcggggaggtgtacatggagaagatcttagagaag
ctccacgttactctgtctaagacaaagagtttatcagatgaaggcaacttactgccacta
atttccttcatctgtgatgtgacctttacgttcttctccaccgtacaagactgcttttca
ttactctctgctcaggatctgttgtttactgtgttccagttcactgcccaagaccaaaca
cgcagtctcctgactgaccctcttttccaaaagctgtgggcggtgtgtaaaactggggtc
cagtcactggctcaaaactctgaatgtgaagtcaaagaaggcagtttcttgcacagtgct
gctgtgtgggtgaaacaccaaatgctgacaagctccctggaccttgacggctttagggtt
ttagtacaagctgttcaggccatagtggaaacagtagttgcttccagtggtcatgactct
ccactgcttatccactttttgagcgcgttaatgccaagccagccgcagtggaaaagaatc
agacaggacttaccacttcagtgggtgaaatcccccttattgtcaagccgctaccgagga
gtttgtgaacaaccctctgtggacgtctggaaatccaaagtgtcaacaaggctacccgct
cacctctgtgccgctgccatgctgagtaaggtggcccagctttctgcattcagtccgtct
gaacaggaagcagattgtccttctcatcagcaaaacctgaagtacacagtttcagagctg
ctgtatacgctgcagtggtgcaaggaggtagggtataaccctgctttagtggcttcatat
cacagcctgctcgtggaatggggactgccagggcagctttacaacctgcttccactggaa
gatgtgctggagacactttactcaaggtcagtcgctgatggagacctctggtctctgact
ctgggagactacatacatgtcaacaagttggcagagactcacagtgcaaaactgaggaag
ctctacagcagcgcagacaggttcctacgtttatcagcaacccaactgaacacagtccag
gttctctgccccatcatggcccaagaagacaaggagagcctcgcggctttggctgtaaac
ggaatcatcagctggcgtgaaactgacagtgaggatacacacacacacgcacacacacac
atgccaaaattcacatttggtatcttggactggaagtttgtgctgtgtgtcatagatgtg
tacgagtgcctggcagttctgctgtgctgtctaaaggccgacacaccggtgcagaatgag
ctgctacagtctgttgtggccaccatgatggagtggaggagcaccaatgagaactggttc
ctctttgacagtgacctgtctaaagcaactactcaagagctgaatttagctgtggaaatg
atgcgtctcctctcttggctggtatctcatcgtccaacagttcttgagagcagccagtgg
gacttcctgctctgctccatgttagcatggttagaggttgcaaaagagaacgtgagaagc
ctctggaacccgtgggtgcagctgttcttttgtgaagatgctgcactgattacgagcttg
aaccagttcttcacagcattgccacctgatgtgctggagaagttgcccccagaactgtcc
ggggagtggacagacttcttcatagatggaatttacaatgtgctgttgcctctcccagcc
agtatcacagatgccttctctgaaccggatgacccagtgttccctttggtggttctacaa
tcagttggccaggctctgatttacgtgcctgtcgagaagctaatacacaacagtctgaag
ccacgcttcatagcgagccagaaaacaaatttgcctgacggtctccagacgctgctcaac
accttctgtccacagcttctgtttagagccagacctctgcagatcaccacctaccacctg
ttagacaagattatgcctgaactgcctgcgtgggacaaagaccacaaattcgatgatgaa
gaagatgaaccttgtctgtctccgccagcatcactcatgacccttctctcgacttgtgag
gacctctgtgaaaacatcctggcaggagttcaagtgggcgagtttgcagtggtccagcct
ctcagtatggagttctcctgcatcctgggctacctgctagcctggaagctgcttctcact
tttttcaagtcctcacccaccgatctgcgggctctgtacgcccagtacctgaaaagaaat
ggctccctgaacaagctcctgcttttccttttcaaactgatgcctgagaaccccgtctac
ccaggccaggggacagagacaaaggagagcaaaaccttcttcaccgagagcctttccctt
gatgttgacaaaagtgtgaacgtgaggtgtgagctccctcacctggcttgtagtgtgtac
tacagtacgctgcaggacatgcccgccatggtgcggctgtggtggaacagtcaggagaag
agagttagcacagttgtggagaagttcactgtcaaatacattagccctgttttgtcagca
caggagatctcatctgtccagctcagcgatcagttgtccgacagcatggctgtgaaagct
cgctccgcagcgcgggaagtgattgctacctattctgtggatgatatctttattgagctg
gtgatacagctcccgcagaattatcctctgggctccatcgctgttgatagtgggaggcgt
gtgggcatcgcattgcagcagtggaggaactggatgctgcagctgagcacctatctcaca
catcagaatggcagcataatggagggcctgactctgtggaagaacaacgtggacaagcgc
tttgagggggtggaagactgtatgatctgcttctccgttatccacggctccaactattcc
ctgcccaagaaggcttgccgcacctgcaaaaagaagttccactcagcgtgtttgtacaaa
tggttcacttccagcaacaagtccacatgtccgctgtgcagagaaaccttcttc
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integrated database retrieval system
