Tetraodon nigroviridis (spotted green pufferfish): GSTEN00019926G001
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Entry
GSTEN00019926G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng04140
Autophagy - animal
tng04142
Lysosome biogenesis
tng04148
Efferocytosis
tng05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
GSTEN00019926G001
04140 Autophagy - animal
GSTEN00019926G001
04148 Efferocytosis
GSTEN00019926G001
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
GSTEN00019926G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tng04131
]
GSTEN00019926G001
Membrane trafficking [BR:
tng04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
GSTEN00019926G001
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
DUF8438
Beta-prop_RIG_2nd
F-protein
Motif
Other DBs
NCBI-ProteinID:
CAG01226
UniProt:
Q4SDQ6
LinkDB
All DBs
Position
10
AA seq
868 aa
AA seq
DB search
MHDAYEPVPILEKLPIQIDCLAAWDDWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLHVVSQYKILVSLLENNIHVHDLLTFQQITGLPKAKGATLFACDLQKTSQGE
ERLRMCVAVKKKLQLYYWKDREFHELEGDLAAPDIPKSMAWCDNSICVGFKRDYYLIRID
GRGSIKELFPTGKQLEPLVAPLADGKVIVVQEDQTVVLNEEGACTQKCPLTWTDIPIAME
HQPPYIIAVLCRCVEIRTFEPRMLVQCVELQRPKFITSAGPNIVYVASNHFVWRLVPVSI
STQIEQLLQDKQFELALHLAKMKDDSDDDKKQQINHIQNLYGFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPLDYRRQLHYPNPLPALSGAELERAHLALIDYLTQKRSRLVKHL
NDSDPSTTSPLMEGTPTIKSQRKLLQIIDTTLLQCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGSENLG
IIFEFSPWVLKICSEDGLKIFTEDLIEVENLPRDKVLHFLMEGFKELAIPYLEHIICVWE
DKSPEFHNVLIQLYLERVQSLMKQYLSSLPEGVPAVAAGKEEGELGEFRTKLLSFLDTST
SYEPAKLISDFPFDGLLEERALLVGRMGKHEQALLIYVHILKDTRMAEEYCHRHYNSSLE
GNKDVYLSLLRMYLSTPDAHCLGPIKLLLPEPQTNLQAALRVLELHHSKLDTTKAINLLP
ANVQIKEIQVFLESVLEEKAQQKRCNQVVKSLLQAEFLRVQEERIFHQQVKCVITDEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKD
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgtatgaaccagtgcctattttggaaaagctgcccattcagattgactgt
cttgcggcctgggatgactggctgcttgtgggaacaaaacctgggcatcttctcctttac
agaataaagaaagatgcaggaactaaccggtttgaagtgacactggagaaatctaataag
aacttttcaaaaaagattcaacagctacacgttgtctcacagtacaaaatacttgttagt
ctactggagaacaacatccatgtccatgaccttctgaccttccagcagatcactgggctg
cctaaagctaaaggagccacactctttgcctgtgatctgcagaaaactagtcaaggagag
gaaagactgagaatgtgtgtcgcagtgaaaaagaaactccaactttattactggaaggat
agagagttccatgaactggagggggatcttgcagctccagatattccaaagtccatggct
tggtgtgacaactccatctgtgttggattcaaacgagactattacctcattcggattgat
gggcgtggctccatcaaggagctcttccccactggaaaacagttggagcccctggttgcc
ccactggctgatgggaaggtgattgttgtacaagaagaccaaactgtagtgctaaatgaa
gaaggagcctgcacccagaaatgcccccttacctggacagatattcccatcgcaatggaa
caccagccaccgtacatcatagctgttctttgtcgatgcgtggagatccgaacctttgag
cccaggatgctggtgcagtgtgtggagctgcagagacctaaattcatcacttcagcaggg
ccaaacatagtctatgttgccagcaaccactttgtttggcgccttgttcccgtgtcaatc
tccacccaaatcgagcagcttcttcaagacaagcagtttgagctggctcttcacctggca
aagatgaaggacgactcagatgacgataagaaacagcagattaatcacatccagaatctg
tacggcttcaacctgttttgccagaagagattcgatgactcgatgcaggtgtttgctaag
ctcggcacagatcctacacatgtgattggcctgtatccagacctgcttccattagactac
cgcaggcagctgcactatcccaaccccctgcctgcactatctggcgcggagctggagagg
gctcatctcgctctcatagattaccttacacagaaacggagccgcctcgtgaagcattta
aatgactctgacccctccacgacctctccgctcatggaaggcacaccgaccattaaaagc
cagagaaaactgctgcagatcatcgataccaccctgctgcagtgttacctgcacaccaat
gtggcactggtgtcccccctcctccgcctggaaaataaccactgccacatcgaggagagc
gagtacgtcctgaagaaggcccataagtacagcgagctcatcattctgtatgagaagaag
ggtctgcatcaaaaagctctgcaggtgctcctggatcagtccacaaaggccaactccccc
ctgaagggccacgagcgaacagtgcagtatctccagagactgggatcggagaacttggga
atcatctttgagttttccccctgggtgttgaagatctgttctgaggacggcctgaaaatc
tttactgaggacctgatagaagtggagaacttacctcgagataaggtgctccacttcctg
atggagggcttcaaggagctggccatcccatatttagagcacattatctgtgtgtgggaa
gataagagcccagagttccacaacgtgctgatccagctctacctagagagggtccagagc
ctcatgaagcagtacctcagctcactcccagaaggagttccagctgttgctgcagggaag
gaggagggggagctgggagagttcaggaccaagctgctgtcttttctggacacttctacc
agctacgaaccagccaaactcatcagcgactttccctttgatggcttgttggaggagcga
gcgttgctggtgggccggatgggcaaacacgagcaggcccttttaatctatgtgcacatc
ctgaaagacacccgcatggctgaggagtactgtcatcggcactacaacagttcactggaa
ggcaataaagatgtgtatctgtccttgctccggatgtacctgtccacccccgatgcccac
tgtctggggcccatcaagctgctgctgccggagccccagaccaacctgcaggcggccctg
cgcgtcctggagctgcaccacagcaaactcgacaccaccaaggccatcaatctgctccca
gcaaatgttcagatcaaagagatccaggtcttcctggagagcgtcctggaggagaaggcc
cagcagaaacgctgcaaccaagtggtgaagagtctgctgcaggccgagttcctcagggtg
caggaggagcgaattttccaccagcaggtcaagtgtgtcattacagacgagaagacctgc
cgagtctgcaaaaagaaaataggaaacagcgcgtttgccaggtaccccaacggcgtggtg
gtgcattacttctgctgcaaagac
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