KEGG   Tetraodon nigroviridis (spotted green pufferfish): GSTEN00020003G001
Entry
GSTEN00020003G001 CDS       T04346                                 
Name
(GenBank) unnamed protein product
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
tng  Tetraodon nigroviridis (spotted green pufferfish)
Brite
KEGG Orthology (KO) [BR:tng00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tng03041]
    GSTEN00020003G001
Spliceosome [BR:tng03041]
 Complex B
  Other components
   Complex B specific factors
    GSTEN00020003G001
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WDR55 WD40_CDC20-Fz Beta-prop_EML Beta-prop_TEP1_2nd LisH_TPL Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_WDR75_1st WD40_Gbeta Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_RSE1_1st Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_ACSF4 PEP5_VPS11_N RMC1_N Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_IFT122_1st Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_IP5PC_F Beta-prop_Aladin KNTC1_N Beta-prop_LRRK2 Beta-prop_NWD2_C Beta-prop_DCAF4 DUF5896 Beta-prop_ELP1_1st LisH_PAC1
Other DBs
NCBI-ProteinID: CAG01284
UniProt: Q4SDJ8
LinkDB
Position
18
AA seq 438 aa
LSSSSVIRLIMQYLKENNLFRTLSTLQEETTLSLNTVESLDSFIADINCGHWDSVLLAIE
SLKLPDSTLIDLYEQVVMELIEMREVGAARSLLRQTDPMIMLKQTQPERYLHLENLLTCS
YFDPLEAYPKGSSKEKRRLAIAETLVREVSVVPPSRLMGLLEQVSNPIARGQRYSHPCSK
QSMKIQQNSDQLSPEMTIDTSTNRSRLMEKETFPTQLYRHIKFGRRSHVECARFSPDGRY
LITGSVDGFIEVWNFNTGKISKDLKYQAQESFMMMDDAVLCMCFSKDAELLATGAQNGKI
KIWNTKSWECVHTHRSVSRASEVPVNNVIPLPQHPEHFLVCNHSNTVVVLNMRGQTVKAF
SSGRQEGAEFVCSTVSPRGEWIYCVGEDLVLYCFNYKTGRLQKTLTVHEKDVIGITHHPH
ENLIATYSEDGLLRLWKP
NT seq 1314 nt   +upstreamnt  +downstreamnt
ctctcctcctccagtgtgatccgcctgatcatgcagtacctgaaggagaacaacctgttc
agaacgctgagcaccttacaggaggaaaccactctgtccctgaacaccgtggaaagcctg
gacagcttcatcgcagatatcaactgtggccactgggactccgttctgctggccatcgag
tccctcaagttacctgacagcacccttattgatctctacgagcaggtggtgatggagctg
attgaaatgagggaggtgggagcagctcgctcgctcctcagacaaacagaccccatgatc
atgctgaaacagacgcagccagagcgctacctccacctggagaacctgctcacgtgctcg
tactttgaccctctggaagcttacccaaaaggcagcagcaaggagaagcggcgcctggcg
atagccgagaccctcgtgagggaggtgagcgtggtccctccttcgcgcctcatggggctc
ctggagcaagtcagcaacccgatagcgaggggccaacggtactctcatccctgttccaaa
cagtctatgaagatccagcagaactcggatcagctctccccagaaatgaccatcgacacc
tccaccaataggagcaggctgatggagaaagagacctttcccacacaactgtaccgccac
atcaagtttgggaggcggtcccacgtggagtgcgcccgtttctctcctgacggcagatac
ttgatcactgggtcggtggacggtttcatcgaggtctggaactttaacactggaaaaatt
agcaaggatttaaagtatcaggcccaggagagtttcatgatgatggacgatgctgtgctg
tgcatgtgcttcagtaaggatgcagaactgctggcaaccggggctcagaatggcaaaata
aagatctggaacacaaagtcctgggaatgtgtccacactcacagatccgtgtcccgggcg
tcggaagtccctgtcaacaatgtcattcccctacctcaacacccagagcactttttggtc
tgtaaccattccaacaccgtggttgtcctcaacatgcgcggccagaccgtcaaggcgttc
agctcaggccggcaggagggagccgagtttgtgtgcagcaccgtgtcgccgcgcggggag
tggatttattgtgtgggagaagatttagtgctgtactgcttcaactacaagacgggaagg
ctgcagaaaacgctgactgttcatgagaaagacgtcattggcatcacccatcacccacac
gagaatctgatcgctacctacagcgaggacggcctcctgaggttgtggaaacct

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